Gene Rpic12D_1240 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_1240 
Symbol 
ID8018885 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp1313754 
End bp1314404 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content64% 
IMG OID644830020 
ProductLexA repressor 
Protein accessionYP_002981201 
Protein GI241662841 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) 
TIGRFAM ID[TIGR00498] SOS regulatory protein LexA 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0593225 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCACCC TCACCCCCCG CCAGCAGCAG ATTTATGACC TCATCCGCCA GACGACCCAG 
CGCACGGGCT TTCCGCCCAC GCGCGCCGAG ATTGCCGCGG AGTTTGGCTT CTCGTCGCCC
AATGCGGCTG AGGAACACCT GCGCGCGCTG GCACGCAAGG GCGTGATCGA ACTGACGCCG
GGCGCCTCAC GTGGCATTCG GCTGCGGGCG GCAGGCGAGA CGGCGCAGCA TCAGTTCTCG
CTGCCGTCGA TGGGGCTGAT GCAATTGACT CTTCCGCTAG TGGGCCGTGT GGCCGCCGGT
AGTCCGATCC TGGCTGCGGA GCACATTGAT CGCCAGTATC AGGTTGATCC ATCGCTGTTT
TCTGCGCAGC CCGATTTTCT GCTGAAGGTG CGTGGTATGA GCATGCGCGA CGCCGGCATT
CTCGATGGCG ATCTGCTGGC CGTGCAGCGC GCCAGTGAAG CCCCCAACGG CAAGATCGTC
GTGGCTCGAC TGGGCGACGA CGTCACGGTC AAGCGCTTCC AGCGCAAGGG CCGCCATGTC
GAACTGATTG CCGAGAATCC CGATTTCGAA CCGATCCACG TTGATCTGGA TCGTGATGAG
TTTCACCTGG AGGGCTTGGC CGTCGGTCTG ATCCGGCCTG CTGCTCCGTA A
 
Protein sequence
MATLTPRQQQ IYDLIRQTTQ RTGFPPTRAE IAAEFGFSSP NAAEEHLRAL ARKGVIELTP 
GASRGIRLRA AGETAQHQFS LPSMGLMQLT LPLVGRVAAG SPILAAEHID RQYQVDPSLF
SAQPDFLLKV RGMSMRDAGI LDGDLLAVQR ASEAPNGKIV VARLGDDVTV KRFQRKGRHV
ELIAENPDFE PIHVDLDRDE FHLEGLAVGL IRPAAP