| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1233 |
|---|
| Symbol | |
|---|
| ID | 8018877 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 1307559 |
|---|
| End bp | 1308335 |
|---|
| Gene Length | 777 bp |
|---|
| Protein Length | 258 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 644830012 |
|---|
| Product | diguanylate phosphodiesterase |
|---|
| Protein accession | YP_002981194 |
|---|
| Protein GI | 241662834 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.924299 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTCAGA TCCATAGCGC AAGCCAACCA TCGGCACCCA ACAGGCGCTG CTCCGGATGC
AACTCCGATG ATGGCACCTC TATCGAGATG GCCTTCGCAT TTCAGCCGAT CGTGGATCTG
CGCACGGGCG ACGCTTACGC ACACGAAGCG CTGGTACGCG GACCCAACGG AGAGCCTGCC
GCATCGGTGC TGACGCAAGT GGACGAAGCA AGCCGTTACC GGTTTGACCA ACGGTGCCGC
ACCACCGCAA TTGAGCAGGC GGCCGGGATC GGAATGGACA CCTTCCTATC CATCAATTTC
ATGCCGAACG CGGTGTATCA GCCTGCCGCA TGTATCCGCA CGACGTTTGA GGCGGCCGAA
AAATTCGGCT TTCCCATCAA TCGGATCATC TTCGAAACCA TCGAAGGCGA AGACATCATC
AACCGCCCCC ACCTCCTCGA AATCTTTCGG GCGTATCAGT CGTTCGGCTT CCAAACCGCG
ATTGATGACT TCGGTGCCGG CCACTCGGGG CTCACCCTAC TCGCCGATTT CCAGCCGGAC
CTGATCAAGT TGGATATGGC ACTTATCCGA GGAATCGATT CAGATCTGGT GCGTCAACGC
ATTGTTTGCG GCGTGCTCAG CATCTGCAAC GACCTCGGGA TCCGGGTCAT TGCCGAAGGC
GTTGAAACGG CGCCGGAACG CGACTTCCTG GCTGCCGCGG GTATCACGCT CATGCAAGGC
TATCTGTTCG CAAAGCCTGC GTTCAGAGCA ATGCCACCGA TATCAAACAG TCGCTGA
|
|---|
| Protein sequence | MIQIHSASQP SAPNRRCSGC NSDDGTSIEM AFAFQPIVDL RTGDAYAHEA LVRGPNGEPA
ASVLTQVDEA SRYRFDQRCR TTAIEQAAGI GMDTFLSINF MPNAVYQPAA CIRTTFEAAE
KFGFPINRII FETIEGEDII NRPHLLEIFR AYQSFGFQTA IDDFGAGHSG LTLLADFQPD
LIKLDMALIR GIDSDLVRQR IVCGVLSICN DLGIRVIAEG VETAPERDFL AAAGITLMQG
YLFAKPAFRA MPPISNSR
|
|---|
| |