| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1232 |
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| Symbol | |
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| ID | 8018876 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | - |
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| Start bp | 1306178 |
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| End bp | 1307428 |
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| Gene Length | 1251 bp |
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| Protein Length | 416 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 644830011 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_002981193 |
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| Protein GI | 241662833 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCACAC CACTGCTAAA ACTATTCGAG GCGGCCATCA CGCAGGCATG GAATGCCATC
GTGATCACCG ATGCCGACAT CGCTGTCGGT TGCCGAGTGC AATTTGCCAA TCCAGCGTTC
ACAGCCATGA CGGGCTATTC TCTGGACGAG CTACGCGGCC ACTCCCTTAG GATTCTTCAA
GGTCCTGACA CCGATCCGGC GTTGATTGAT GAACTTCGCA TTTGCCTGGA AGAGGCGCGA
CTCTTCGAGG GCACCGCAAC GAACTATCGA AAGGACGGCT CAAGCTACAC CGTCCGCTGG
AGCATTTCGC CAGTTCGCGA CGACAGCGGG TTGGTCACCA ATTTTGTCTC GGTGCAACAG
GATATTTCCG ACTACGAACA GGCAGAGCAG ACAAACAGAC TGCTCGCACG CGCGCTTGAT
GCAACAAGTG ACCCGGTCAT GCTGACGGAT GCAAAAGCTC GGATCATCTT CGCAAATGCT
GCCTTCGCCA AATCAACGGG CTACACGGTC GACGAAATCC AAGGCAGCAC GCCCGCCATG
TTCAAGTCAG GCAAACATGA CGAGGCTTTT TATGCGGCGA TGCGCCGCTC GCTTGCCAGC
GGACAAAACT TTCGCGCCAC CTTCATCAAT CGGCGCCGTG ACGGCTCGCT CTACCATGCA
GAACAAAGCA TCTCGCCGAT ATTCGGCGAG AAAGGGCGTA TAAGCCACTA CGTTAGTGTG
AGCAAAGACA TTACCAAACG CGTAGAGCGG GAACAGGCAC TGTTACGTGC AGCCACCAAA
GACAAGCTCA CCGGCCTGCA CAATCGTCAC CATGGCGAGC AGCTCCTTGC GGAGCGGTAC
AAGACCGCCA GGACGCTGCA GCGCCCCCTT ACCCTCGCCA TGTGCGACAT CGACCACTTC
AAGAGGATCA ATGACGAGTT CGGTCATCCC ACCGGAGACC GCGTACTGGC CGAGGTGGCC
GACATGCTCC GGCAAGCGGT CCGCAGTCGC GACGCTGTCA TTCGTTGGGG TGGAGAAGAA
TTCATGATCG TGCTCAACGA ATGCTCACAG ACGGATGCCG TCGACCTGGC CAAGCGCATT
CTCGATCGCG TCAACGCTTA TGAAGATGAG GAAATCCCCA CGCTGACCCT TTCGCTCGGG
CTCGCGACGC TGGCTCCCAA CGAGGCGATC GATGAGCTCA TCGCACGTGC TGACTCGGCT
CTTTACGAAG CGAAACGCAC CGGGCGTAAC CGGCTATCAA TCGCGACTTG A
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| Protein sequence | MSTPLLKLFE AAITQAWNAI VITDADIAVG CRVQFANPAF TAMTGYSLDE LRGHSLRILQ
GPDTDPALID ELRICLEEAR LFEGTATNYR KDGSSYTVRW SISPVRDDSG LVTNFVSVQQ
DISDYEQAEQ TNRLLARALD ATSDPVMLTD AKARIIFANA AFAKSTGYTV DEIQGSTPAM
FKSGKHDEAF YAAMRRSLAS GQNFRATFIN RRRDGSLYHA EQSISPIFGE KGRISHYVSV
SKDITKRVER EQALLRAATK DKLTGLHNRH HGEQLLAERY KTARTLQRPL TLAMCDIDHF
KRINDEFGHP TGDRVLAEVA DMLRQAVRSR DAVIRWGGEE FMIVLNECSQ TDAVDLAKRI
LDRVNAYEDE EIPTLTLSLG LATLAPNEAI DELIARADSA LYEAKRTGRN RLSIAT
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