Gene Rpic12D_1214 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_1214 
Symbol 
ID8018858 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp1289461 
End bp1290750 
Gene Length1290 bp 
Protein Length429 aa 
Translation table11 
GC content67% 
IMG OID644829996 
Productsecretion protein HlyD family protein 
Protein accessionYP_002981178 
Protein GI241662818 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID[TIGR00998] efflux pump membrane protein (multidrug resistance protein A) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.314397 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGACA ACAAGCCCCA AGCCGCACCG TCCGCTGCTC CCGCACCCGC AGCTCCCGCG 
GCAACGCCCC CGGGCAACGG CAATGCCAAC GGAAAGCGCA AACGCATGCT GACAACGCTG
GCCGCCGCAC TGGTGGTTGC CGGCGTCGGC TACGGACTCT ACTGGGGCCT GTACGGCCGC
TGGTTCGAGT CCACCGACGA CGCATACGTG CAAGGCAACG TGGTCCAGGT GACGCCGCAG
GTGGCGGGCA CCGTGATCGC CATTCGCGCC GATGACACGC AGCTTGTGAC CTCCGGCCAG
CCCGTGATCG AACTGGACCG TGCCGATGCA CGCGTCGCAC TCGAGCAGGC CGAAGCCGCG
CTAGCGCAGA CGGTGCGCCA AGTACGCACG CTCTATTCGA ACACCAGCGC CTACACCGCC
ACGCTCGCCA TGCGTGAGAG CGATCTCGCC AAGGCCAAGG ATGATTTGGC GCGCCGCAAG
CAGATCGCCG GTACGGGCGC CGTGTCGCAG GAAGAAATCT CGCACGCACA AACCGCTGTG
CAGGCTGCGC AGTCCGCACT GGAAGCCGCC AAGGAACAAC TGCAGGGCAA CCGCGTGCTG
ACCGAGCAGA CCACGCTGGA GCGGCACCCG AACGTGTTGC AAGCCGCGGC GAAGGTCCGC
GAGGCGTATC TCGCCTATGC GCGTACGAGC CTGCCCGCCT CTGTCACGGG CTATGTGGCC
AAGCGTTCGG TGCAGGTCGG CCAGCGCGTC GCGCCGGGCA CGCCGCTGAT GGCCATCGTG
CCGCTGGATC AGCTCTGGGT GGACGCCAAC TTCAAGGAAG TGCAGGTGCG CCATATGCGC
GTGGGCCAGC CGGTTGAACT GGTGGCCGAC GTGTATGGCA GCAGCGTGAC GTACCACGGC
AAGGTGGTCG GCTTCTCGGC GGGTACGGGC TCGGCGTTTT CGCTGCTGCC GGCACAGAAC
GCCACCGGCA ACTGGATCAA GGTGGTGCAA CGCCTGCCGG TGCGCGTGTC GCTCGACCCG
AAGGAGCTGA AGGACCATCC GCTGCGTGTG GGTCTGTCGA TGGAAGCCAA GGTCGACATC
CATGATGAAG GCGGCCAGAG CCTGGCCACC GCACCGGCTG CATCGCCGTT GCAAACCACC
GTCTACGATC AGGCCGGCAA GGACGCCGAT CAGGTCATCG CGAGCATCAT CAGCGCCAAC
GCAGGTCGCG GCGGTGCAAC GGCGCCGGCC GCTTCCAACG TGCCGGCCGT ATCGGCTCCG
CGCACTTCGC AACCCGCACC CAAGGTCTGA
 
Protein sequence
MSDNKPQAAP SAAPAPAAPA ATPPGNGNAN GKRKRMLTTL AAALVVAGVG YGLYWGLYGR 
WFESTDDAYV QGNVVQVTPQ VAGTVIAIRA DDTQLVTSGQ PVIELDRADA RVALEQAEAA
LAQTVRQVRT LYSNTSAYTA TLAMRESDLA KAKDDLARRK QIAGTGAVSQ EEISHAQTAV
QAAQSALEAA KEQLQGNRVL TEQTTLERHP NVLQAAAKVR EAYLAYARTS LPASVTGYVA
KRSVQVGQRV APGTPLMAIV PLDQLWVDAN FKEVQVRHMR VGQPVELVAD VYGSSVTYHG
KVVGFSAGTG SAFSLLPAQN ATGNWIKVVQ RLPVRVSLDP KELKDHPLRV GLSMEAKVDI
HDEGGQSLAT APAASPLQTT VYDQAGKDAD QVIASIISAN AGRGGATAPA ASNVPAVSAP
RTSQPAPKV