Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_1214 |
Symbol | |
ID | 8018858 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | - |
Start bp | 1289461 |
End bp | 1290750 |
Gene Length | 1290 bp |
Protein Length | 429 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644829996 |
Product | secretion protein HlyD family protein |
Protein accession | YP_002981178 |
Protein GI | 241662818 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR00998] efflux pump membrane protein (multidrug resistance protein A) |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.314397 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGACA ACAAGCCCCA AGCCGCACCG TCCGCTGCTC CCGCACCCGC AGCTCCCGCG GCAACGCCCC CGGGCAACGG CAATGCCAAC GGAAAGCGCA AACGCATGCT GACAACGCTG GCCGCCGCAC TGGTGGTTGC CGGCGTCGGC TACGGACTCT ACTGGGGCCT GTACGGCCGC TGGTTCGAGT CCACCGACGA CGCATACGTG CAAGGCAACG TGGTCCAGGT GACGCCGCAG GTGGCGGGCA CCGTGATCGC CATTCGCGCC GATGACACGC AGCTTGTGAC CTCCGGCCAG CCCGTGATCG AACTGGACCG TGCCGATGCA CGCGTCGCAC TCGAGCAGGC CGAAGCCGCG CTAGCGCAGA CGGTGCGCCA AGTACGCACG CTCTATTCGA ACACCAGCGC CTACACCGCC ACGCTCGCCA TGCGTGAGAG CGATCTCGCC AAGGCCAAGG ATGATTTGGC GCGCCGCAAG CAGATCGCCG GTACGGGCGC CGTGTCGCAG GAAGAAATCT CGCACGCACA AACCGCTGTG CAGGCTGCGC AGTCCGCACT GGAAGCCGCC AAGGAACAAC TGCAGGGCAA CCGCGTGCTG ACCGAGCAGA CCACGCTGGA GCGGCACCCG AACGTGTTGC AAGCCGCGGC GAAGGTCCGC GAGGCGTATC TCGCCTATGC GCGTACGAGC CTGCCCGCCT CTGTCACGGG CTATGTGGCC AAGCGTTCGG TGCAGGTCGG CCAGCGCGTC GCGCCGGGCA CGCCGCTGAT GGCCATCGTG CCGCTGGATC AGCTCTGGGT GGACGCCAAC TTCAAGGAAG TGCAGGTGCG CCATATGCGC GTGGGCCAGC CGGTTGAACT GGTGGCCGAC GTGTATGGCA GCAGCGTGAC GTACCACGGC AAGGTGGTCG GCTTCTCGGC GGGTACGGGC TCGGCGTTTT CGCTGCTGCC GGCACAGAAC GCCACCGGCA ACTGGATCAA GGTGGTGCAA CGCCTGCCGG TGCGCGTGTC GCTCGACCCG AAGGAGCTGA AGGACCATCC GCTGCGTGTG GGTCTGTCGA TGGAAGCCAA GGTCGACATC CATGATGAAG GCGGCCAGAG CCTGGCCACC GCACCGGCTG CATCGCCGTT GCAAACCACC GTCTACGATC AGGCCGGCAA GGACGCCGAT CAGGTCATCG CGAGCATCAT CAGCGCCAAC GCAGGTCGCG GCGGTGCAAC GGCGCCGGCC GCTTCCAACG TGCCGGCCGT ATCGGCTCCG CGCACTTCGC AACCCGCACC CAAGGTCTGA
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Protein sequence | MSDNKPQAAP SAAPAPAAPA ATPPGNGNAN GKRKRMLTTL AAALVVAGVG YGLYWGLYGR WFESTDDAYV QGNVVQVTPQ VAGTVIAIRA DDTQLVTSGQ PVIELDRADA RVALEQAEAA LAQTVRQVRT LYSNTSAYTA TLAMRESDLA KAKDDLARRK QIAGTGAVSQ EEISHAQTAV QAAQSALEAA KEQLQGNRVL TEQTTLERHP NVLQAAAKVR EAYLAYARTS LPASVTGYVA KRSVQVGQRV APGTPLMAIV PLDQLWVDAN FKEVQVRHMR VGQPVELVAD VYGSSVTYHG KVVGFSAGTG SAFSLLPAQN ATGNWIKVVQ RLPVRVSLDP KELKDHPLRV GLSMEAKVDI HDEGGQSLAT APAASPLQTT VYDQAGKDAD QVIASIISAN AGRGGATAPA ASNVPAVSAP RTSQPAPKV
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