Gene Rpic12D_1154 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_1154 
Symbol 
ID8018797 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp1219726 
End bp1220904 
Gene Length1179 bp 
Protein Length392 aa 
Translation table11 
GC content64% 
IMG OID644829935 
Productouter membrane assembly lipoprotein YfgL 
Protein accessionYP_002981118 
Protein GI241662758 
COG category[S] Function unknown 
COG ID[COG1520] FOG: WD40-like repeat 
TIGRFAM ID[TIGR03300] outer membrane assembly lipoprotein YfgL 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.536052 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTCACG CACTTGAGCA GGGTGGTGTC GCGCGCGGTA TTGCACAGGC GGCGCGCGTG 
GCAGTGCTGG CACTGGCAGC GACGGCTGTC CTTGGCGGTT GCTCGCTGTT CAGCAGCAAG
AACAAGCATG AGCCGGCCAA GCTGATGGAG GTTCAGCAAG TGCTGGCAGT GCGTCAGGTG
TGGAGCGTCA GCGTCGGCAA GAGCGGCCGC TACGTGATGC AGCCGGCGGT GGCGGGCAAC
AACGTCTACG TGTCGGCCGC CGGCGGTACT GTGACCGCCC TGGATGGCGC GACCGGCCGC
ACGGTCTGGC AAGGCAAGGC GGACGTGGAC CTGACCACTG GCCCCGGCAG CGACGGCACC
CTGACCGCGG TGGCGGGTGA GAAGGGCGCG GTCATCGCTT TCGACGAAAA GGGCGCGCAG
AAGTGGAAGG TCGCCGTTAA CGGTGAAGTC CTGACGGCGC CGCTGGTTGG GCAGGGATTG
GTGATCGTCC GCACGACGGA TGGTCGCGTC CTGGGTCTGG ACCCCAGCAA CGGCGAACGC
AAGTGGATCT ATCAGCGTTC TCCCTCGGCG CTGAACCTGC GCAGCAGTCT GCCGATGATT
TTTGCCGGCG ATAACATCAT CCTGGGGTTT GCCGGTGGCA AGCTGGGTGC GCTGTCGGCC
AGCAATGGCG CGCTGCGCTG GGAAGCTGCC GTGTCGTATC CGCGTGGCGT ATCGGAAATC
GAGCGGCTGA ACGATGTGAC CGGTGCGCCG TCGGTCAACG GTTCGCAAGT CTGCGCAGCC
AGTTTCCAAG GTCGCGTGGC GTGTTTTGAT ATGAGCACTG GCGCCCCGCG CTGGGGTCGT
GATTTCTCGT CGCCGACCGG CGTGACGCAA GATGATGGCG GGTTGTTCGC CGCTGACGAG
AAGTCGGTTG TCTACGGCTT TAACGCACAA AACGGTGCCG ACCTCTGGAA AAACGACGCG
CTGCTATGGC GCGACCTCGG TACGCCGCTG GCGTTTGGCC GTGCGGTCAT CGTGGGCGAT
TCCGAAGGTT GGCTGCATTT CCTGTCGCGC GATGATGGCA AGTTCGTCGC GCGCGTGAAA
ACCGACGGCA GCGCCATTGG CGCAGCACCT GTGGTGGTCG GCCAGACACT CGTCGTCCAA
ACCCGCGGCG GCGGTGTCTA CGGCTATCTG CCGAAGTAA
 
Protein sequence
MIHALEQGGV ARGIAQAARV AVLALAATAV LGGCSLFSSK NKHEPAKLME VQQVLAVRQV 
WSVSVGKSGR YVMQPAVAGN NVYVSAAGGT VTALDGATGR TVWQGKADVD LTTGPGSDGT
LTAVAGEKGA VIAFDEKGAQ KWKVAVNGEV LTAPLVGQGL VIVRTTDGRV LGLDPSNGER
KWIYQRSPSA LNLRSSLPMI FAGDNIILGF AGGKLGALSA SNGALRWEAA VSYPRGVSEI
ERLNDVTGAP SVNGSQVCAA SFQGRVACFD MSTGAPRWGR DFSSPTGVTQ DDGGLFAADE
KSVVYGFNAQ NGADLWKNDA LLWRDLGTPL AFGRAVIVGD SEGWLHFLSR DDGKFVARVK
TDGSAIGAAP VVVGQTLVVQ TRGGGVYGYL PK