Gene Rpic12D_1137 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_1137 
Symbol 
ID8018780 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand+ 
Start bp1202371 
End bp1203000 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content64% 
IMG OID644829918 
Producttranscriptional regulator, TetR family 
Protein accessionYP_002981101 
Protein GI241662741 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.13929 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.961099 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTAAGC ACCCCGAACC CGCCACCGCT GAAGGCGCCG AAGCCCGGCA CGACACCCGC 
GACCGCATCC TGGACGCTGG TGCCGAGCTG ATCCTCGGGC GCGGTTTTTC GGCCGTCGGG 
TTGGCGGAAA TCCTGGGCCG TGCGCAGGTA CCCAAGGGCT CGTTTTATTA CTACTTCGGG 
TCGAAGGAAG ATTTTGGCGT CGCCATGCTG GAGCGCTATT TCCAGGACTA CGACGCGGGC 
GTTGTCAGCC TGTTCAACGA CACGCGCATC ACCGCCCGTG AGCGGCTGCT GCGCTATTTC 
TTGGCCTGGA TCGATCTGCA TGAGCGCAGC GCGTGCGAAG TCACGTGCCT GGCGGTCAAG 
CTTTCAGGCG AGGTATCGGA TTTGTCGGAG CCGATGCGCA AGGTGTTGTC GGCAGGGATG 
ACGCGCATGG TCGAGCGCAT CGCCACCGCG ATCGAGGCCG GTGTCGCCGA CGGCTCGTTG 
GCGCCGGTGC AGGACGCGCA CGAACTGGCC GAAGGCCTGT ACGCCATGTG GATGGGTGGT 
GCACTGCTGG CCAAGGCGCA CCGCACGGTC GACGCGTTCA AGAGCTGTGT CGCGCAAACG 
GAAATGCTGC TAGCCAAGCC CAAACACTGA
 
Protein sequence
MSKHPEPATA EGAEARHDTR DRILDAGAEL ILGRGFSAVG LAEILGRAQV PKGSFYYYFG 
SKEDFGVAML ERYFQDYDAG VVSLFNDTRI TARERLLRYF LAWIDLHERS ACEVTCLAVK 
LSGEVSDLSE PMRKVLSAGM TRMVERIATA IEAGVADGSL APVQDAHELA EGLYAMWMGG 
ALLAKAHRTV DAFKSCVAQT EMLLAKPKH