| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1131 |
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| Symbol | |
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| ID | 8018774 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | - |
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| Start bp | 1195745 |
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| End bp | 1197085 |
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| Gene Length | 1341 bp |
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| Protein Length | 446 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644829912 |
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| Product | Carbohydrate-selective porin OprB |
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| Protein accession | YP_002981095 |
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| Protein GI | 241662735 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3659] Carbohydrate-selective porin |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.778341 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGAGCCG TGCAACAAGC CACGGCGGCC TTCATGCTCG TATTGAGTCT GCAAAGCGCT
GCGCTGGCGG CTGGCGCGGA AACGCCTGCC GCGGACATCC CGGAGCCAGA GCGATGGAAC
GTGCATGGAC AGTTCACCAA CGTGACGCAA TGGCATCCGT CGTTCCGCTC GCCGTACAGC
GGCACCAATA GCCTCACGCC TGACAACAAC ACCAAGGAGA CGGTCGACGT CACGCTCTAC
CTCGGCCTGC GCCTGTGGAA GGGCGCCGAG CTGTACGCGA ACCCGGAAAT CGACCAAGGT
TTCGGACTAA GCAATACGGT CGGCCTGGCC GGCTTCTCAA GCGGGGAGGC CTACAAGATC
GGCAACAATG CCCCCTACCG CAAGCTGCCG CGCTTGTTCC TGCGGCAGGT CATTAATCTC
GGCGGCGAGC AGCAGGCAGT AGAGTCAGCT CCCAACCAGC TTGCCGGCAG CCGCTCGGCA
GACAACGTCA CCATCACCGT CGGCAAGTTC TCGGTGGCAG ACATATTCGA CACGAACACG
TACGCGCACG ACCCGCGGGG CGATTTCCTG AACTGGGCGG TGATCGATGC CGGCGCATTC
GACTATGCAG CTGACGCCTG GGGCTACACG CATGGTCTGG CGGTGGAATG GACGCAATCG
TGGTGGTCGC TGCGCGGCGG ACTCTTCGCG CTTTCGGTGG TACCCAACAG TGTCACGATC
GACACCACGT GGAAGCAGTA CCAGTGGGTG GGCGAATTTG AAGCGCGCCA TGATTGGTTC
GGCCGCCCGG GCAAGGTCAA GCTGCTCGCC TTTGCAACGC GAGGCCGGAT GGGTGGTTAT
GGCGATGCGG TCAACCTCGC CCAACAGACG GGCAACACGC CGGACACGGG CCTCGTGCGG
CGCCTCGCCT GGCGCCCCGG TGTTGCCTTG AACCTGGAGC AGGAAATCAC CTCCGACCTG
GGCGTCTTCG CACGGGCCAG CATGAACGAC GGCAGCAAGG AAACATACGA ATTCACCGAC
ATCAACCAGT CAGTGTCGGC CGGGTTCTCG CTGAAGGGCA ACCGTTGGGG GCGTCCGAAC
GACACGTTCG GTGCCGCCAT GGTGGTGAAC GGCCTGTCGC GCGCGGCGCG CCAATATTTC
GCGGCCGGCG GCATGGGCGT ATTGATTGGT GATGGCGCGC TCAACTACGG CACCGAACGC
ATCGCCGAGC TGTACTACAA CTGGGCGGCC ATCAAACACC TCACGCTGGG GCTGAACTAC
CAGTATGTGG TCCATCCGGC GTACAACCGG GATCGCGGCC CGGTGTCGAT CGTCGGGGCA
CGCGTTCACG CCGAATTTTA A
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| Protein sequence | MGAVQQATAA FMLVLSLQSA ALAAGAETPA ADIPEPERWN VHGQFTNVTQ WHPSFRSPYS
GTNSLTPDNN TKETVDVTLY LGLRLWKGAE LYANPEIDQG FGLSNTVGLA GFSSGEAYKI
GNNAPYRKLP RLFLRQVINL GGEQQAVESA PNQLAGSRSA DNVTITVGKF SVADIFDTNT
YAHDPRGDFL NWAVIDAGAF DYAADAWGYT HGLAVEWTQS WWSLRGGLFA LSVVPNSVTI
DTTWKQYQWV GEFEARHDWF GRPGKVKLLA FATRGRMGGY GDAVNLAQQT GNTPDTGLVR
RLAWRPGVAL NLEQEITSDL GVFARASMND GSKETYEFTD INQSVSAGFS LKGNRWGRPN
DTFGAAMVVN GLSRAARQYF AAGGMGVLIG DGALNYGTER IAELYYNWAA IKHLTLGLNY
QYVVHPAYNR DRGPVSIVGA RVHAEF
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