| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1040 |
|---|
| Symbol | |
|---|
| ID | 8018675 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 1091343 |
|---|
| End bp | 1092491 |
|---|
| Gene Length | 1149 bp |
|---|
| Protein Length | 382 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644829815 |
|---|
| Product | Extracellular ligand-binding receptor |
|---|
| Protein accession | YP_002981005 |
|---|
| Protein GI | 241662645 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.098407 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCGTT CTTTTGCTTC ATTTGCGAGT TTTTTGTGGC TAGTGCTTAC CTGCTTTGTA
TTGGTGTCTG ATTTTTCTTA TGCGGAAGAC GGAGTTTTTG ATCATAAAAT TCTAATTGGG
CAGATCGCGG GTTTTACCGG TCCATCGAAA GAGCCGGTTA GAGAATTGGC CAGAGGGGCG
CAAATCTATA TTGATTCTGT TAATCAACTA GGAGGGGTGA ATGGGCGATT GATCGACATC
GTAGCGCGCG ATGACCGTTT TGATCCTTTG GTTGCGCGGG AGCAAGCACG TATCTTGCTG
ACTAGGGAGC GGGTCTTCGC ATTCTTCCTG CCACGCGCTA CGCCCAACAC AGAAGCAATC
TTGAGCGAGG CACGGCTCGC AGGTGTGCCA ATTGTTGGGC CATCCACAGG CGCGGCGTTC
TTTTTCGAGC ACCCGGATCC CGTTCTATTC ATGGTTCGCG CTAAGTATAA AAATGAGATA
GCAAAATTAA TGCAGTATTT TCGTACTCTT GGATTAAAAC GTTTTGCTTT AATCAATGTG
AACGATACAT TTGGTCAGGA TACGGCAGCT GGTTTTCTTG AGGTAACGCA AGATTTTTCA
GAAAGCTCAA AGCGTGTTTT TACAGTGGAT AGACTTAAAC CTGATATTAA AAAAGCTACT
GGTGAGATTG CGAGATTTGC ACCGCAAGCC GTTATAGTGG CTTGCCCAGA AGCAACCGCG
CGGGGCGCTA TCTTAGATCT TTCGAAGTCG GCCGATATTG CTCAAATCGC GGTGTTGTCA
AACAATGCAA ACAGATCATT TGCCGAATCC TTAGGACCGG CCGGTCGGGG GGTTGTGATG
ACGCAAGTCA TGCCCTCACC TATTCGCCCG ACGTCAAAAA TTGGGCGTGA ATTGGCAGCT
GCAGCCAAGT CCGTTGGCGA GACTCCCTCA TACGCCATGA TGGAAGGTTA TGCATCCGCC
AAAGTCCTTG TCGAAGGTCT TAGGCGTGCG GGTGCAATGC CAACGCGAGC AAGCTTTCTT
GCGGGCCTTG AATCGTTAGG TACGTTCGAT CTTGGCGGGA TTGAGGTACG TTATGGTCGT
AGCAGACGAG AGGGGTCGAA TTATGTGGAG CTTTCGGTTA TCGGGCCGAA TGGGGAGTTC
GTCAAGTAG
|
|---|
| Protein sequence | MMRSFASFAS FLWLVLTCFV LVSDFSYAED GVFDHKILIG QIAGFTGPSK EPVRELARGA
QIYIDSVNQL GGVNGRLIDI VARDDRFDPL VAREQARILL TRERVFAFFL PRATPNTEAI
LSEARLAGVP IVGPSTGAAF FFEHPDPVLF MVRAKYKNEI AKLMQYFRTL GLKRFALINV
NDTFGQDTAA GFLEVTQDFS ESSKRVFTVD RLKPDIKKAT GEIARFAPQA VIVACPEATA
RGAILDLSKS ADIAQIAVLS NNANRSFAES LGPAGRGVVM TQVMPSPIRP TSKIGRELAA
AAKSVGETPS YAMMEGYASA KVLVEGLRRA GAMPTRASFL AGLESLGTFD LGGIEVRYGR
SRREGSNYVE LSVIGPNGEF VK
|
|---|
| |