| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1028 |
|---|
| Symbol | |
|---|
| ID | 8018663 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 1080134 |
|---|
| End bp | 1080964 |
|---|
| Gene Length | 831 bp |
|---|
| Protein Length | 276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644829806 |
|---|
| Product | Integrase catalytic region |
|---|
| Protein accession | YP_002980996 |
|---|
| Protein GI | 241662636 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2826] Transposase and inactivated derivatives, IS30 family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCAGG AACGGTTCGA GGTCTCGGAG CGCAAAGCCT GCCGCGTCGT GGGCCAGTCC
CGGGCCGTAC AGCGCTATGT GGCGACGGTG CGCGCTGACG AGGACGCACT CACGCAGGCC
ATCGTTGCGC TGGCGGCCGA GTACGGTCGC TATGGCTACC GACGCATCAC GGCGCTGTTG
CAGGCCAGCG GTTGGCAGGT TGGCCGCGAC CGGGTACAGC GCATCTGGCG TCGCGAGGGG
CTCAAGGTAC CGAAGAAGCA GCGCCCGAGG GGCCGTCTAT GGTTCAACGA TGGCTCCTGT
GTGCGGCTAC GCCCGGAGTA TCCACATCAC GTCTGGAGCT ACGACTTCGT GCACCACACT
ACCGAAGACG GCCGCAGCCT GCGGCTGATG ACGCTCGTCG ACGAGTTCTC GCGCCAGTGT
CTAGCCATCA AGGTAGGACG ACGCTTGAAC AGTATGGACG TCATCGAGAC ACTGGCCGAC
GCCATGCTGG CACATGGCAT CCCCGCGCAT GTGCGCTCGG ACAACGGTGC GGAGATGACA
GCGAACATCG TGCGTGACTG GCTGGGACGT TTGGGTGCGA AGACGCTGTT CATCGCACCC
GGCAGCCCGT GGGAGAACGG CTACTGCGAG TCCTTCAACG GCAAGCTGCG CGATGAGCTG
CTCAACGGCG AACTGTTCTA CAGCCTCAAA GAAGCGCAGG TCGTCATTGA ACAATGGCGC
CGGCACTACA ACACGCGGCG ACCGCATTCG TCGCTTGGAT ACCGTCCACC GGCCCCTGCC
GCCCACTGGC CAACACCGAT GACCGCACAG CAACCAGGCA CCATCCAATA A
|
|---|
| Protein sequence | MLQERFEVSE RKACRVVGQS RAVQRYVATV RADEDALTQA IVALAAEYGR YGYRRITALL
QASGWQVGRD RVQRIWRREG LKVPKKQRPR GRLWFNDGSC VRLRPEYPHH VWSYDFVHHT
TEDGRSLRLM TLVDEFSRQC LAIKVGRRLN SMDVIETLAD AMLAHGIPAH VRSDNGAEMT
ANIVRDWLGR LGAKTLFIAP GSPWENGYCE SFNGKLRDEL LNGELFYSLK EAQVVIEQWR
RHYNTRRPHS SLGYRPPAPA AHWPTPMTAQ QPGTIQ
|
|---|
| |