Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_1006 |
Symbol | |
ID | 8018641 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | + |
Start bp | 1058172 |
End bp | 1060505 |
Gene Length | 2334 bp |
Protein Length | 777 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644829787 |
Product | PAS/PAC sensor signal transduction histidine kinase |
Protein accession | YP_002980977 |
Protein GI | 241662617 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4252] Predicted transmembrane sensor domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGAAC CCGTACCCGC CCAATCGGCC GTGCGCAGCC TTGGGCGGCG CGCGCTGGTG GAGTGGGGGG TGCTGGTGGC GCTGGCTGCG CTGCTGACAT TCGGTGCGGT GCGCTGGAGC GTGGTCGCGC GGCTGGATGC GGCGCTGTAC GACACCGTCG TTACGCTGCA CGGGCATGCG CCGCGCGACG ATATCGTCAT CGTTGCCATT GATGATCAAA GTCTTGACGC CGTGGGGCGC TGGCCGTGGC CCCGCAGCCG CCTGGCCGAC CTCATTGCGC GGGTGGGACG GGCGCAGCCG CGCGCCATCG GCGTCGATAT TCTGCTGATC GAACCCGATC TTGCGCAGCC CGAAGGCGAT CGAGCATTGA CTGCCGCCAT CGAGCAGGCC GGACACGTCA TCCTGCCGGC CTTGCCGGAG CGCACCGAGC GGGGGCGCGT GTATCACTAT CCGTTCCTCG GTATCAACGC GTCCGTCGCG CATATCAATG CCGCCCCCGA CGCGGATAGC GTGGTACGCG GCATGTATCT GGCAGAGGGG CCGCGAACGC ATATGCTGGA CCATCTTGCC GTGCAACTTG CGCGGCAGGC GCTGCGCCCG CCGTCATCCG TACCGGCGCT GCCCGATGTG GAGACCGACG CCGGCGGCTG GGTGCGGCAG GCGTATATCC GCCTGAATTT TGCTGGGCCG GCCGGTACAT ACCGGCATGT GCCGGCGCTG GATGTGCTCA ACGGCCACGT GCCGCCCGAG GCGCTTGCCG GCAAGCTGGT ACTGATCGGG GCCACCGCAT CGGGAGTGTC CGACATCTTT GCGACGCCGC CCTCGCGCAC GATGAGCGGC GTCGAAGTGC TTGCCAATGC CACGCAGACG GTACTCGACG GCAGCGCCAT CCTGCCGGCG CCACCGGGCG TGTTCTGGGC GATGACGCTG CTCCCCCTGC TGATGACCGC GTTTGCCGTG CGCTGGCTCA CGCCGCGTAT GGCGCTTGCA GTGGCGGTGA CGGGTGCTGT CGTGTTGTTG CTGAGCGCAA TCGGCGCGCT GGTGGTTGGC AATCGCTGGC TGCCGCCGTT TGCGGCGCTG GTCGGCCCGC TGGTGTTGTA TCCGCTGTGG AGCTGGCGCC AGCAGGAAGC CGCGTTGCGC TTTCTGCGCG ACGAGCTGCA GCGTCTGGCG CGCGAGCCCG GCCTGTTGGG CGATACCGCG CCGCTGGTCC GCACCGGCCG CACGCTCGGC GCGCACATGG ATGCCGTCGC CTCGCTGACG GACAAGCTGC GTGGGCTGCG CCGCTTCCTG GCCGATGCGC TGGAGAGCCT GCCCGATGCG ACCGTCATCT GCACGCACGA CGGCACGATC CGCCTGGCGA ATGGCCGCAG CGCAGACCTG GCCGGCCAGA TGCAGGCGCC GGGCCAGATC CGCGCGGCCG CGCTGCGCGA CCTGTCGACG CTGCTGGCGC GTGCGTTTCC CGACCCCACA GCGGGAGAGC ACTACTGGGC GCGCTGGCTC GCCGATCCCA CCGGGCTCGA ACCCGTCGAG CTGCAGACGC ACGACGGCCG CTCGATGTTG ATGCACGCCG CCGCGCTGCG GGACGAAGTG GGGCGCCCCG TCGACATCAT CGTCAGCTTT GCCGACATCA CCCCCGTGCG CCAGGCCGAG CGCCATCGCG AAGAAGCGCT GCGGTTTATC TCGCACGACA TGCGTTCGCC GCAGAGCGCC ATCCTCGCCC TGATCGAGCT GCAGCGCGAT GCGTCGCGCG CGTTGGACCG CGAGGTGCTT CTGTCTCGCA TCGAGCAGCT GTCGTCGCGC ACGCTGGAGT TGGCCGATGC CTTCATCGAC CTGGCGCGCG CCGAATCGCA AACGCTCAAG CTGGTGGACG TGGATCTCGT GGGCCTCGTG CTCGATGCCG CCGACGAGGT CTGGCCGCTG GCGAATCGTC ACCAGGTGGA AGTGCGCGTG GTGGCCGACA TCGAAGCAGC GGTGCGCGGC GAGCCGCGCT TGCTGGTGCG CGCGCTGGTG AACTTGCTCA ACAACGCCAT CAAGTTCAGC GCAGCCGGCT CCATGGTGAC GGTATCGGTG GAGCAGGACG AAGCGATGTT CTCGGTGGCC GTGGCGGACC AGGGGGCCGG CATCGCCCTT GCCGATCAGC CGCGGCTGTT TCAGCCGTTT CATCGCTTGC ATGAAGGCGC GGCCAATGCG CCCGCCGGCA GCGGCTTGGG TCTCGTATTC GTGAAGACGG TGGTCGACCG GCATGGCGGC CGCATTGCTG TGCAAAGCAC ACCCGGCCTG GGGTCGACCT TCACGCTGTG GCTGCCGCGC GTCGCGCATC GCCACGACGC CTGA
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Protein sequence | MTEPVPAQSA VRSLGRRALV EWGVLVALAA LLTFGAVRWS VVARLDAALY DTVVTLHGHA PRDDIVIVAI DDQSLDAVGR WPWPRSRLAD LIARVGRAQP RAIGVDILLI EPDLAQPEGD RALTAAIEQA GHVILPALPE RTERGRVYHY PFLGINASVA HINAAPDADS VVRGMYLAEG PRTHMLDHLA VQLARQALRP PSSVPALPDV ETDAGGWVRQ AYIRLNFAGP AGTYRHVPAL DVLNGHVPPE ALAGKLVLIG ATASGVSDIF ATPPSRTMSG VEVLANATQT VLDGSAILPA PPGVFWAMTL LPLLMTAFAV RWLTPRMALA VAVTGAVVLL LSAIGALVVG NRWLPPFAAL VGPLVLYPLW SWRQQEAALR FLRDELQRLA REPGLLGDTA PLVRTGRTLG AHMDAVASLT DKLRGLRRFL ADALESLPDA TVICTHDGTI RLANGRSADL AGQMQAPGQI RAAALRDLST LLARAFPDPT AGEHYWARWL ADPTGLEPVE LQTHDGRSML MHAAALRDEV GRPVDIIVSF ADITPVRQAE RHREEALRFI SHDMRSPQSA ILALIELQRD ASRALDREVL LSRIEQLSSR TLELADAFID LARAESQTLK LVDVDLVGLV LDAADEVWPL ANRHQVEVRV VADIEAAVRG EPRLLVRALV NLLNNAIKFS AAGSMVTVSV EQDEAMFSVA VADQGAGIAL ADQPRLFQPF HRLHEGAANA PAGSGLGLVF VKTVVDRHGG RIAVQSTPGL GSTFTLWLPR VAHRHDA
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