Gene Rpic12D_1006 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_1006 
Symbol 
ID8018641 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp1058172 
End bp1060505 
Gene Length2334 bp 
Protein Length777 aa 
Translation table11 
GC content69% 
IMG OID644829787 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_002980977 
Protein GI241662617 
COG category[T] Signal transduction mechanisms 
COG ID[COG4252] Predicted transmembrane sensor domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTGAAC CCGTACCCGC CCAATCGGCC GTGCGCAGCC TTGGGCGGCG CGCGCTGGTG 
GAGTGGGGGG TGCTGGTGGC GCTGGCTGCG CTGCTGACAT TCGGTGCGGT GCGCTGGAGC
GTGGTCGCGC GGCTGGATGC GGCGCTGTAC GACACCGTCG TTACGCTGCA CGGGCATGCG
CCGCGCGACG ATATCGTCAT CGTTGCCATT GATGATCAAA GTCTTGACGC CGTGGGGCGC
TGGCCGTGGC CCCGCAGCCG CCTGGCCGAC CTCATTGCGC GGGTGGGACG GGCGCAGCCG
CGCGCCATCG GCGTCGATAT TCTGCTGATC GAACCCGATC TTGCGCAGCC CGAAGGCGAT
CGAGCATTGA CTGCCGCCAT CGAGCAGGCC GGACACGTCA TCCTGCCGGC CTTGCCGGAG
CGCACCGAGC GGGGGCGCGT GTATCACTAT CCGTTCCTCG GTATCAACGC GTCCGTCGCG
CATATCAATG CCGCCCCCGA CGCGGATAGC GTGGTACGCG GCATGTATCT GGCAGAGGGG
CCGCGAACGC ATATGCTGGA CCATCTTGCC GTGCAACTTG CGCGGCAGGC GCTGCGCCCG
CCGTCATCCG TACCGGCGCT GCCCGATGTG GAGACCGACG CCGGCGGCTG GGTGCGGCAG
GCGTATATCC GCCTGAATTT TGCTGGGCCG GCCGGTACAT ACCGGCATGT GCCGGCGCTG
GATGTGCTCA ACGGCCACGT GCCGCCCGAG GCGCTTGCCG GCAAGCTGGT ACTGATCGGG
GCCACCGCAT CGGGAGTGTC CGACATCTTT GCGACGCCGC CCTCGCGCAC GATGAGCGGC
GTCGAAGTGC TTGCCAATGC CACGCAGACG GTACTCGACG GCAGCGCCAT CCTGCCGGCG
CCACCGGGCG TGTTCTGGGC GATGACGCTG CTCCCCCTGC TGATGACCGC GTTTGCCGTG
CGCTGGCTCA CGCCGCGTAT GGCGCTTGCA GTGGCGGTGA CGGGTGCTGT CGTGTTGTTG
CTGAGCGCAA TCGGCGCGCT GGTGGTTGGC AATCGCTGGC TGCCGCCGTT TGCGGCGCTG
GTCGGCCCGC TGGTGTTGTA TCCGCTGTGG AGCTGGCGCC AGCAGGAAGC CGCGTTGCGC
TTTCTGCGCG ACGAGCTGCA GCGTCTGGCG CGCGAGCCCG GCCTGTTGGG CGATACCGCG
CCGCTGGTCC GCACCGGCCG CACGCTCGGC GCGCACATGG ATGCCGTCGC CTCGCTGACG
GACAAGCTGC GTGGGCTGCG CCGCTTCCTG GCCGATGCGC TGGAGAGCCT GCCCGATGCG
ACCGTCATCT GCACGCACGA CGGCACGATC CGCCTGGCGA ATGGCCGCAG CGCAGACCTG
GCCGGCCAGA TGCAGGCGCC GGGCCAGATC CGCGCGGCCG CGCTGCGCGA CCTGTCGACG
CTGCTGGCGC GTGCGTTTCC CGACCCCACA GCGGGAGAGC ACTACTGGGC GCGCTGGCTC
GCCGATCCCA CCGGGCTCGA ACCCGTCGAG CTGCAGACGC ACGACGGCCG CTCGATGTTG
ATGCACGCCG CCGCGCTGCG GGACGAAGTG GGGCGCCCCG TCGACATCAT CGTCAGCTTT
GCCGACATCA CCCCCGTGCG CCAGGCCGAG CGCCATCGCG AAGAAGCGCT GCGGTTTATC
TCGCACGACA TGCGTTCGCC GCAGAGCGCC ATCCTCGCCC TGATCGAGCT GCAGCGCGAT
GCGTCGCGCG CGTTGGACCG CGAGGTGCTT CTGTCTCGCA TCGAGCAGCT GTCGTCGCGC
ACGCTGGAGT TGGCCGATGC CTTCATCGAC CTGGCGCGCG CCGAATCGCA AACGCTCAAG
CTGGTGGACG TGGATCTCGT GGGCCTCGTG CTCGATGCCG CCGACGAGGT CTGGCCGCTG
GCGAATCGTC ACCAGGTGGA AGTGCGCGTG GTGGCCGACA TCGAAGCAGC GGTGCGCGGC
GAGCCGCGCT TGCTGGTGCG CGCGCTGGTG AACTTGCTCA ACAACGCCAT CAAGTTCAGC
GCAGCCGGCT CCATGGTGAC GGTATCGGTG GAGCAGGACG AAGCGATGTT CTCGGTGGCC
GTGGCGGACC AGGGGGCCGG CATCGCCCTT GCCGATCAGC CGCGGCTGTT TCAGCCGTTT
CATCGCTTGC ATGAAGGCGC GGCCAATGCG CCCGCCGGCA GCGGCTTGGG TCTCGTATTC
GTGAAGACGG TGGTCGACCG GCATGGCGGC CGCATTGCTG TGCAAAGCAC ACCCGGCCTG
GGGTCGACCT TCACGCTGTG GCTGCCGCGC GTCGCGCATC GCCACGACGC CTGA
 
Protein sequence
MTEPVPAQSA VRSLGRRALV EWGVLVALAA LLTFGAVRWS VVARLDAALY DTVVTLHGHA 
PRDDIVIVAI DDQSLDAVGR WPWPRSRLAD LIARVGRAQP RAIGVDILLI EPDLAQPEGD
RALTAAIEQA GHVILPALPE RTERGRVYHY PFLGINASVA HINAAPDADS VVRGMYLAEG
PRTHMLDHLA VQLARQALRP PSSVPALPDV ETDAGGWVRQ AYIRLNFAGP AGTYRHVPAL
DVLNGHVPPE ALAGKLVLIG ATASGVSDIF ATPPSRTMSG VEVLANATQT VLDGSAILPA
PPGVFWAMTL LPLLMTAFAV RWLTPRMALA VAVTGAVVLL LSAIGALVVG NRWLPPFAAL
VGPLVLYPLW SWRQQEAALR FLRDELQRLA REPGLLGDTA PLVRTGRTLG AHMDAVASLT
DKLRGLRRFL ADALESLPDA TVICTHDGTI RLANGRSADL AGQMQAPGQI RAAALRDLST
LLARAFPDPT AGEHYWARWL ADPTGLEPVE LQTHDGRSML MHAAALRDEV GRPVDIIVSF
ADITPVRQAE RHREEALRFI SHDMRSPQSA ILALIELQRD ASRALDREVL LSRIEQLSSR
TLELADAFID LARAESQTLK LVDVDLVGLV LDAADEVWPL ANRHQVEVRV VADIEAAVRG
EPRLLVRALV NLLNNAIKFS AAGSMVTVSV EQDEAMFSVA VADQGAGIAL ADQPRLFQPF
HRLHEGAANA PAGSGLGLVF VKTVVDRHGG RIAVQSTPGL GSTFTLWLPR VAHRHDA