| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_1005 |
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| Symbol | |
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| ID | 8018640 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | + |
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| Start bp | 1056500 |
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| End bp | 1058179 |
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| Gene Length | 1680 bp |
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| Protein Length | 559 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644829786 |
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| Product | Peptidoglycan-binding LysM |
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| Protein accession | YP_002980976 |
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| Protein GI | 241662616 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4254] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0784845 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGAAGC AAGCTGACGC AATCTGGGGT GGTTTGATTG GGCGCGCCGC GTTTGTCGGC
GCGTTCGTTC TTTTTGGCGG CGTGTGGCAG GCGGCGATCG CTCAGCCTTC CGGCGCTGAT
GGTGGCGATT TCGTCTACCG CGTGCAGCAG GGCGACACGC TGATCAACCT CTCTGAACGT
TACATGGACA GCGTCGAAGG CTGGCGCCTG CTGCAGCGGC GCAACCATGT GGCCGATCCG
TATCGGTTGA AGCCCGGCTC GCTCCTCCGG ATTCCGTTCG ATCGCATTCC GGTCGTGCCA
GCAACGGCGC AGGTCGTGTT TGCACGTGAC GCAACCACCG GCGGCAAGCC CCTGCAGACT
GGCACGAAGC TCGCAGAAGA TGCGCAGATC GACACCGGCG ACAAAGGCGC CGTGACGCTG
GCCTTTGACG ACGGCACACG CGTGACGGTG CCACCGGGCA GCCACGTTGC GCTGTCGCGT
GTGCGGGCGT TTGCGCGCGC CGGGTTGATC GATGTGCGCG TGCACGTGAA GAAGGGCGAA
GCGGAATCCA ACGTCGCGCC CAAGAAGAGC GGTGTGGGCC GTTACGAGAT TTCCACGCCA
GCGCTGGTGA CGGGCGTGCG AGGTACGCGT TTCCGCGTGC AGGCCAGCGA AGCGGGTTCG
ACGAGTTCCG TGCTGGAAGG TGAGGTTGCC ACAAGCGCCG GTCGTCAGAG GCAAGCGGTC
AAGGCTGGCT TTGGCGTGGT GGCATCGGCG GGACACCTCA AGCGTGCCGC GCTGCCGGCC
CCGCCCAAGC TCGGCGCCAT TCCCGAACTT GTGCAGACGC CGTGCCTGCG CGCGACGTGG
CAGCCGGTGA AGGGTGCGGT CGGATATCGC GCTGCCGTGG CGCGGGATGC GGCGCTGACC
GAACTCAGTG CCTATCAATC AAGCAAGACC CCGGCGGCAA CGCTCTGCGG CGATGAGGAC
GGCGACTACA CGCTCGTCGT GCAGAGCGTC GACGCGCTTG GACTGACCAG TGAATCGGCC
ACGCGGCCGT TCACTGTGCG GCTCCATCCG GAAGCGCCGT ACACGATCCA GCCGGGTAGC
GATCGGACCT ACCGCAGCGG GGACGTGGCA TTTGCATGGG CTGTCGTGTC CGATGCTGGT
AGCTATGACC TGGAAGTGGC GGGCACCGAG AGCTTTGCCT CGCCGGCCGT TCAGCAGCAT
GGCGAGGACG TGCGTCTGAC CAGGCCGTTG ACGGCTGGCA CATGGTGGTG GCGTGTGCGC
TCGGTGGCAG CGGACGGCAA AACCGGCCCG TGGAGCGATG CGCTTCGTTT TCGCGTGCTC
GACATTCCGC TCGATGCCGT ACCGACAGCC GAAGTGGAAG CGAGCGATGA CGGCAAGCTG
CATGCCCACT GGTCGGCGTT GTCGCCCGAA CTGGCGGCAT CTGGCGCGCG CACGCGTGTG
CAATTGGCGG GCGACACAAG CTTCGCCAAA CCCATCGCCG ACATCGTGAG CGACGGCAAC
GAGGCCACCA TTCCGAGGCC GCCGTCCGGC GTGTATTACA TCCGCACCGG CGTCGACTTG
GGCGATGCGG CATCGGTGGT CTACGCCAAG CCGCAGCGCA TTGACGTCGG TGCCTTCGTC
GGCGATTCCG CGCGCACCCC GGTGCAGAGC GGCGGCGGCA ATCTCCTCCT CAATGACTGA
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| Protein sequence | MVKQADAIWG GLIGRAAFVG AFVLFGGVWQ AAIAQPSGAD GGDFVYRVQQ GDTLINLSER
YMDSVEGWRL LQRRNHVADP YRLKPGSLLR IPFDRIPVVP ATAQVVFARD ATTGGKPLQT
GTKLAEDAQI DTGDKGAVTL AFDDGTRVTV PPGSHVALSR VRAFARAGLI DVRVHVKKGE
AESNVAPKKS GVGRYEISTP ALVTGVRGTR FRVQASEAGS TSSVLEGEVA TSAGRQRQAV
KAGFGVVASA GHLKRAALPA PPKLGAIPEL VQTPCLRATW QPVKGAVGYR AAVARDAALT
ELSAYQSSKT PAATLCGDED GDYTLVVQSV DALGLTSESA TRPFTVRLHP EAPYTIQPGS
DRTYRSGDVA FAWAVVSDAG SYDLEVAGTE SFASPAVQQH GEDVRLTRPL TAGTWWWRVR
SVAADGKTGP WSDALRFRVL DIPLDAVPTA EVEASDDGKL HAHWSALSPE LAASGARTRV
QLAGDTSFAK PIADIVSDGN EATIPRPPSG VYYIRTGVDL GDAASVVYAK PQRIDVGAFV
GDSARTPVQS GGGNLLLND
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