Gene Rpic12D_0988 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_0988 
Symbol 
ID8018620 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp1038757 
End bp1040268 
Gene Length1512 bp 
Protein Length503 aa 
Translation table11 
GC content64% 
IMG OID644829767 
Productprotease Do 
Protein accessionYP_002980960 
Protein GI241662600 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0294533 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTACCG CTCGAACCGT TCACGCTTTG CGTCTACTGT GCATTGCCGC CGCCTTGGCG 
GTCGGGAGCG CGCTGACACC CGCCCACGCC CAGAACGCCA TGGGTAGCGT GGCTACGGGC
ACGTATGGCC TTCCCGATTT TGCCGATCTG GTCGAGAAAG TCAGCCCCGC TGTCGTCAAC
ATCCGCACGA CCGAAAAGGT CCGTATGCAG CAGGGTGGTC CGAACGATGA CGACATGGCC
GAGTTCTTCC GCCGCTTCTT TGGTGTGCCG ATGCCTGGCA TGCCCGGGCA GGGCCAGAAG
CGCCGCAACG CGCCGCCCCA ACAGGAAGAG GAGCAGAGCC GTGGCGTCGG TTCCGGCTTC
ATCATCTCGG GTGACGGCTA CATTTTGACC AACGCGCATG TGGTGGAAGG CGCGGAAACC
ATCTACGTCA CGCTGATCGA CAAACGCGAG TACAAAGCCA AGCTGATCGG CCTGGACAAA
CGCACCGATG TAGCGCTCGT CAAGGTGGAG GCGACGGGGT TGCCCAGCCT GAAGCTCGGC
GATTCCGACA AGGTGCGCGT TGGCGAGTGG GTGCTTGCGA TTGGTTCTCC GTTTGGTCTC
GACAATACGG TGACGGCGGG CATTGTGTCG GCCAAGGGAC GCGATACCGG CGACTACCTG
CCGTTCATCC AATCCGATGT GGCTGTCAAC CCAGGCAACT CGGGCGGCCC GCTGATCAAC
CTGCGTGGTG AGGTGATCGG CATCAACAAC CAGATCTACA GCCAGAGCGG CGGCTACATG
GGTATCTCGT TCTCGATCCC GATCGACGAG GCGATGCGTG TGGCTGAGCA GTTGAAGGCG
ACGGGGCGCG TGACACGCGG CCGCATCGGT GTGGCAATCG ACAACGTGCC GAAGGATGCA
GCGGAGTCGC TGGGTCTGGG CCGTGCGCGC GGCGCCTATG TCGGCAATGT CGAGTCGGGT
GGGCCTGCAG ACAAGGCCGG CATCGAGGCT GGTGACATCG TCTTGAAGTA CAACGGCCGC
GATATCGAGA AGGCGGGAGA CTTGCAGCGC CAGGTCGGCG AGACCAAGCC GGGCACGCGC
GCAACCGTGC AGGTCTGGCG CAAGGGCGCA ACGCGCGATC TGACCGTGAC GGTCGCCGAG
TTGCAGGCCG ATACGAAGGT GGCGCAGCGC TCCAAGGGCG CGCAGCCTGA TAACAGCCAG
CAGGGCCCGG GCAAGCCGAA TGCCCTCGGG CTGGTGGTGT CGGACTTGTC CGACGGCGCG
CGTCGCGAGT TCAAGACCAA GAGTGGCGTT GAGGTGCAGG TGTCGGAAGG ACCGGCGGCG
CGTGTCGGCA TTCGCCCAGG CGATCTGATC CTGCGTGTCG GCGATACGGA TGTCACCAAC
GCCAAGCAGT TCAACGAGCT GGTCGCCAGG CTCGACAAGA ACCGCATGGT TGCCGTGTTT
GTACGCCGCG GTGACGCCAC GCAGGTCGTG ACGCTGCGCC CGAGCGCAGC CCGCTCGGGA
AGTGGTCAGT GA
 
Protein sequence
MRTARTVHAL RLLCIAAALA VGSALTPAHA QNAMGSVATG TYGLPDFADL VEKVSPAVVN 
IRTTEKVRMQ QGGPNDDDMA EFFRRFFGVP MPGMPGQGQK RRNAPPQQEE EQSRGVGSGF
IISGDGYILT NAHVVEGAET IYVTLIDKRE YKAKLIGLDK RTDVALVKVE ATGLPSLKLG
DSDKVRVGEW VLAIGSPFGL DNTVTAGIVS AKGRDTGDYL PFIQSDVAVN PGNSGGPLIN
LRGEVIGINN QIYSQSGGYM GISFSIPIDE AMRVAEQLKA TGRVTRGRIG VAIDNVPKDA
AESLGLGRAR GAYVGNVESG GPADKAGIEA GDIVLKYNGR DIEKAGDLQR QVGETKPGTR
ATVQVWRKGA TRDLTVTVAE LQADTKVAQR SKGAQPDNSQ QGPGKPNALG LVVSDLSDGA
RREFKTKSGV EVQVSEGPAA RVGIRPGDLI LRVGDTDVTN AKQFNELVAR LDKNRMVAVF
VRRGDATQVV TLRPSAARSG SGQ