| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0970 |
|---|
| Symbol | |
|---|
| ID | 8018602 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 1020517 |
|---|
| End bp | 1023543 |
|---|
| Gene Length | 3027 bp |
|---|
| Protein Length | 1008 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644829749 |
|---|
| Product | ribonuclease, Rne/Rng family |
|---|
| Protein accession | YP_002980942 |
|---|
| Protein GI | 241662582 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1530] Ribonucleases G and E |
|---|
| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.100697 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGCA TGTTGTTCAA TGCGACGCAG CAAGAAGAAT TGCGCGTCGC CATTGTCGAT
GGTCAGAAAC TCATCGACAT CGACATCGAA ACCGCCGGGC GCGAACAGCG CAAAGGCAAT
ATCTACAAGG GTGTCATCAC CCGCATCGAA CCGTCGCTGG AAGCGTGCTT CGTCAATTAC
GGCGAAGAGC GACACGGTTT TCTCCCCTTC AAGGAAGTCG CCCGCGCCTA TTTCAAGGAC
GGTGTGGACG TGCGCAATGC GCGCATCCAG GATGCGCTGC GCGAAGGCCA GGAGCTGATC
GTCCAGGTCG AGAAGGAAGA GCGCGGCAAC AAGGGCGCTG CCCTGACCAC CTTCATCTCG
TTGGCTGGCC GCTACCTGGT TTTGATGCCG AACAACCCGC GGGGCGGCGG CGTGTCGCGC
CGCATCGAGG GCGAAGACCG CCAGGAACTG CGCGAAACCA TGGCGCAGCT GGAAGTGCCG
GACGGCATGA GCATCATCGC CCGCACCGCC GGCATCGGCC GCTCGGCTGA AGAGCTGCAG
TGGGACTTGA ACTACCTGAT GCAGCTGTGG AAAGCCGTTG ACGGCGCTGC TGTCGACAAC
AAGGCCCCGC TGCTGATTTA TCTCGAATCC AGCCTGGTGA TCCGGGCGAT TCGCGATTAC
TTCCAGCCGG ATATCGGCGA AATCCTGATC GATACGGACG ATATCTACGA TCAGGCCCGC
GCTTTCATGA GCGTGGTAAT GCCCGACAAC ATGAATCGGG TGAAGAAGTA CCGCGACGAC
GTTCCCCTGT TCTCGCGCTT CCAGATCGAA CACCAGATTG AATCGGCGTA CTCGCGCATG
GTCATGCTGC CCTCGGGCGG CGCAATTGTG ATCGACCACA CCGAGGCGCT CGTCGCCATT
GACGTGAACT CGGCGCGCGC CACCAAGGGC GCCGATATCG AGGAAACCGC CGCGCGCACC
AACCTCGAGG CTGCCGACGA AATCGCCCGC CAGCTCCGCC TGCGTGACCT CGGCGGCCTG
ATCGTGATCG ACTTCATCGA CATGGAGTCG AGCAAGGCGC AGAAGGATGT CGAAACCCGC
CTGAAAGACG CGCTGCGTCA CGACCGCGCC CGGGTGCAAA TGGGCAAGAT CAGCCGCTTC
GGCCTAATGG AGCTGTCGCG CCAGCGCCTG CGTCCGTCGC TGTCGGAAGG CTCGCACGTC
ACTTGCCCGC GCTGTAACGG CACGGGCCAC ATTCGCGATA CCGAATCGTC TGCCCTGCAG
GTGCTGCGCA TCATCCAGGA AGAGGCGATG AAGGAAAACA CCGCCGCGAT CCACTGCCAG
GTGCCGGTGG AAGTAGCCGC GTTCCTGCTC AACGAGAAGC GCCCGGACAT CAACCTGATC
GAGACGCGCT TCAAGGTCAA CGTGTTGCTG ATCCCGAACA AGCATCTGGA GACGCCGCAC
TACAAGCTGG AGCGCCTGCG CCACGACGAT CCGCGCCTGG ACGAAGACAA GGCCAGCTAC
AAGATGGCCG AAGAGGCTGC CAAGGAACTG GAAGCCGACA CGGCTTACAG CACGCGCAAG
GAAGCTGCCA AGCCGCGTCA GGAAGCCGCC GTCAAGGGCA TCACCCCGGA CCAACCGGCA
CCCGTGTCGG TACCGCGTGC CGAGCGTCCG GCCCGTGCGG AAATTGCTCC GGCACCGCAA
GCGCCGACTC CGGCTCCGGT CCCTGCCCAG CGTGGTTTTG TCTCGTGGCT GAAGGCGCTG
TTTGGCGCCA AACCGGCCGA GCCGGTAGTG ACTGCACCGG TGGAAACGCC GAAGCAACGT
GCTGAAGAAG GCAACCGCCA AGGCCGCGGC AATCGCCAGG ACCGTGGTGG GCGTGGCCAG
CGTGGCGAGC GCCAAGGTCA AGGTCAGAAC GGCCGCGATG GCAGCCGCCA GGGCCGTGAG
CGCAACGAAG CCCGTGAAGG ACAGCAACAA GTCCAGCGCG AAGGTCAACG TGACGGTCAG
CGCGGCAACC GCGATCGCAA CCGCCAGCCG GCCCAGGTCG AAGGCGCTGT CCGCGAGGCG
GCTGAAGCGC GCCAGCCGCA GCAAGGTCAG GAGGTTCGCT CCGAGGGTCA GAACCAGGGT
CAAGGCCGCC GGGAGCGCAA CCAGGAACGT CGCGAGCGCC AACCGCGTGA GGGCCGAGAA
GCCCGCGAGG GCCGGGAGCC GCGTGAGCCA CGTGAAAACC GCGAGCCGCG CGAAAACCGT
GGCGAGCGCG ACCAACAAGC CAAGGAAGCC GCAGCCGTGG CCGCCGAAGC CCTGATCGAC
CAGACCGCCG CATCGCAAGT GCCGCAACCG CTGCTCGACA CCGCTGCTCC GGTAGAAGGC
ATCGAGGGCG AAGGCGTGAC GCCGGGCGCG GAGGGCAACG GTGAAGGTGA AGAGCGCCGG
CGCCGTGGGC GCCGTGGCCG CAACCGCTAT CGCCGTGACC GCGAGGGCGC GGAAGGCGTC
CGTGCGGAAG GTGAAGGTGA AGGCGAAAAC GAAGGCGCCG AAAGCGCAGA CGAAGCCGTC
GCCGTCATGC ATGCCGAGCC GGTGCTGCCC GCAACCGTGA CGGAACCTGT GCTGACCGCT
TCGTTCGCAC CGGTCGAAAA CCCGGCTCCG GTGGTGCACG AGCCGGTGCA TGCCGCGGAA
GCCGTGGCAC CTGTGTCGGC ACTGCCGCAA GTGCAGCCGA CAGAGCCCGC GCTCGCGACG
GCTGTTGCAG CGCCCGCGCC CGCACCCGCA GCGGCGGCGC CGCAAGAGGC CATCGTGACG
GCGTTTGCCG AAGTGCCGGC ACCGGTCAGC ACGATCGCCC AGGCTTCGCC GCTGCCAATC
GAGACGCTGC AAAGCGTGCT CGACAACGCT GGCATGACGT GGGTCCACAC CGATAGCCAG
AAGCTGCGTG CGTCGCAGGA AGAAGCTGCG CGCACCGTTG CCGCGCCGCG TGTGCCCCGT
GAACGCAAGC CGCTGCCGCC GATCCAGCAA GGCCCGATGA TCCTGGTCGA AACCAACCGC
CCAGCGGCTG GCATGGACCA GCAGTAA
|
|---|
| Protein sequence | MKRMLFNATQ QEELRVAIVD GQKLIDIDIE TAGREQRKGN IYKGVITRIE PSLEACFVNY
GEERHGFLPF KEVARAYFKD GVDVRNARIQ DALREGQELI VQVEKEERGN KGAALTTFIS
LAGRYLVLMP NNPRGGGVSR RIEGEDRQEL RETMAQLEVP DGMSIIARTA GIGRSAEELQ
WDLNYLMQLW KAVDGAAVDN KAPLLIYLES SLVIRAIRDY FQPDIGEILI DTDDIYDQAR
AFMSVVMPDN MNRVKKYRDD VPLFSRFQIE HQIESAYSRM VMLPSGGAIV IDHTEALVAI
DVNSARATKG ADIEETAART NLEAADEIAR QLRLRDLGGL IVIDFIDMES SKAQKDVETR
LKDALRHDRA RVQMGKISRF GLMELSRQRL RPSLSEGSHV TCPRCNGTGH IRDTESSALQ
VLRIIQEEAM KENTAAIHCQ VPVEVAAFLL NEKRPDINLI ETRFKVNVLL IPNKHLETPH
YKLERLRHDD PRLDEDKASY KMAEEAAKEL EADTAYSTRK EAAKPRQEAA VKGITPDQPA
PVSVPRAERP ARAEIAPAPQ APTPAPVPAQ RGFVSWLKAL FGAKPAEPVV TAPVETPKQR
AEEGNRQGRG NRQDRGGRGQ RGERQGQGQN GRDGSRQGRE RNEAREGQQQ VQREGQRDGQ
RGNRDRNRQP AQVEGAVREA AEARQPQQGQ EVRSEGQNQG QGRRERNQER RERQPREGRE
AREGREPREP RENREPRENR GERDQQAKEA AAVAAEALID QTAASQVPQP LLDTAAPVEG
IEGEGVTPGA EGNGEGEERR RRGRRGRNRY RRDREGAEGV RAEGEGEGEN EGAESADEAV
AVMHAEPVLP ATVTEPVLTA SFAPVENPAP VVHEPVHAAE AVAPVSALPQ VQPTEPALAT
AVAAPAPAPA AAAPQEAIVT AFAEVPAPVS TIAQASPLPI ETLQSVLDNA GMTWVHTDSQ
KLRASQEEAA RTVAAPRVPR ERKPLPPIQQ GPMILVETNR PAAGMDQQ
|
|---|
| |