| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0958 |
|---|
| Symbol | lysS |
|---|
| ID | 8018590 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 1007095 |
|---|
| End bp | 1008639 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644829737 |
|---|
| Product | lysyl-tRNA synthetase |
|---|
| Protein accession | YP_002980930 |
|---|
| Protein GI | 241662570 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
|---|
| TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0760523 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAAC AGAACAACCC GGCCGAATCG AGTACCGCGG CCGCCGTGCC GGCGCAGGAC
GACAACAAGA TCATCGCCGA GCGCCGCGAG AAGCTCGCGG AGATCCGCCA GCAAGGCGTC
GCGTTCCCCA ACGATTTTCG CCCGACGCAC CATGCCGGTG ATCTGCAAGC CAAGTACCGC
GAGCTGGAGC AGGCTGCTCT GGAAGCGGAA CCGGTGCAGG TGGCCATTGC GGGACGCATG
ATGCTCAAGC GCGTGATGGG CAAGGCCAGC TTTGCCACCG TGCAGGACAG CACCGACCGC
ATCCAGTTCT ACATCAGCCG CGACGCCGTG GGCGAAGACG TCTACGCCAG CTTCAAGAAG
TGGGACTTGG GCGACATCGT GGCGGCGCGC GGCACGCTGA TGAAGACGAA GACCGGCGAA
CTGTCGGTGG CTGTGACGGA GCTGCGCCTG CTCTCGAAGA GCCTGCGTCC GCTGCCGGGC
GACTACTACG GCCTGGCTGA CCAGGAGCAG AAGTACCGCC AGCGCTACGT CGATCTGATC
GTCTCGAAGG AAACGCGCGA CACATTCCGC GCCCGCACCA AGGCCATGGC CTCGCTGCGC
AACTTCATGG CCGGCAACGG TTTCATGGAA GTCGAAACGC CGATGCTGCA CCCCATTCCG
GGCGGCGCGG CGGCCAAGCC GTTCATCACG CATCACAACG CATTGGACAT GCAGATGTTC
CTGCGCATCG CGCCGGAGCT GTATCTCAAG CGACTGATCG TCGGCGGCTT CGAGCGCGTG
TACGAGATCA ACCGCAACTT CCGTAACGAG GGCGTGTCGC CGCGACACAA CCCCGAGTTC
ACGATGATGG AGTTCTACGC GGCTTACACG GACTACCGCT GGCTGATGGA CTTCACCGAG
CAGCTGATCC GCCAGGCGGC GATCGACGCG TCGGGCACCG CCACGCTCAC CTATCAGGGC
CGCGAGCTGG ATCTGGCCAA GCCGTTCCAT CGCCTGACCA TCTGCCAGGC GATCCAGAAG
TACGCGCCGC AATACACGGA CGCGCAGTTG GCTGACGTCG ACTTCCTGCG CGCCGAGCTG
AAGAAGTTCA AGATCGACAC CAATGCGCCG CAATTCCTGA ACGCCGGCGT GGGTACCCTG
CAGCTTGTGC TGTTTGAAGA AACCGCCGAG TCGCAACTGT GGGAGCCCAC CTTCATCATT
GACTACCCGG TCGAAGTGTC GCCGCTGGCA CGTGGCTCCG ACACGCTGCC GGGCATCACC
GAGCGCTTCG AGTTGTTCAT CACCGGCCGC GAAATCGCCA ACGGTTTCTC CGAGCTGAAT
GATCCGGAAG ACCAGGCCGA GCGCTTCCGC AAGCAGGTCG AACAGAAGGA CGCCGGCGAC
GAAGAAGCCA TGTTCTATGA CGCCGATTAC ATCCGCGCCT TGGAATACGG CATGCCCCCG
ACCGGCGGCT GCGGCATCGG CATTGACCGT CTGGTGATGC TGCTCACCGA CAGCCCAAAC
ATCCGCGACG TGATCCTTTT CCCGCACCTG CGCCGCGAAG ACTGA
|
|---|
| Protein sequence | MTEQNNPAES STAAAVPAQD DNKIIAERRE KLAEIRQQGV AFPNDFRPTH HAGDLQAKYR
ELEQAALEAE PVQVAIAGRM MLKRVMGKAS FATVQDSTDR IQFYISRDAV GEDVYASFKK
WDLGDIVAAR GTLMKTKTGE LSVAVTELRL LSKSLRPLPG DYYGLADQEQ KYRQRYVDLI
VSKETRDTFR ARTKAMASLR NFMAGNGFME VETPMLHPIP GGAAAKPFIT HHNALDMQMF
LRIAPELYLK RLIVGGFERV YEINRNFRNE GVSPRHNPEF TMMEFYAAYT DYRWLMDFTE
QLIRQAAIDA SGTATLTYQG RELDLAKPFH RLTICQAIQK YAPQYTDAQL ADVDFLRAEL
KKFKIDTNAP QFLNAGVGTL QLVLFEETAE SQLWEPTFII DYPVEVSPLA RGSDTLPGIT
ERFELFITGR EIANGFSELN DPEDQAERFR KQVEQKDAGD EEAMFYDADY IRALEYGMPP
TGGCGIGIDR LVMLLTDSPN IRDVILFPHL RRED
|
|---|
| |