| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0901 |
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| Symbol | |
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| ID | 8018533 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | + |
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| Start bp | 942259 |
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| End bp | 943149 |
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| Gene Length | 891 bp |
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| Protein Length | 296 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644829681 |
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| Product | Lytic transglycosylase catalytic |
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| Protein accession | YP_002980874 |
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| Protein GI | 241662514 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.408914 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCTTT CCGTACGTTT CGCATTCGCA TTGACGGCGC TGGCCCTGTT GGCCAGCCAG
CCGGCGCGCG CGGACGTCTA CGGCTACATC GATGAAAACG GTCTGGCGCA CTTCGCTGCC
GAACGGCTGG ACGATCGCTA CGTGCTGTTC ATGAAGGGCG CGGCGGTGGC GGGCAAGGGC
GACGACAAGG CCAAGGACGA TAGCGCCATC GCCCTGCCGG AAACCGAGCT GCCCGATACC
GATGCCTATC TCAACGCCAG CAAGCGCGAT GCACTCGACA ACGCCGCCGG CATGCGCCAG
CGCCTGGTGC GCGCGGTGCT GCAGCACCCG AACGTGCCGA CGGTGGAGCC GCTGATCCGC
CAGGCCGCGA CCAAGCACGG TATCGACCCC GCGTTAGTGA AGGCCGTGAT TGCCGCTGAA
TCGGGTTTCA ACCCGCAGGC CGTGTCGCCC AAGGGGGCAA TCGGGCTGAT GCAGGTGATT
CCGGACACCG GCGCGCGCTA CGGCGTGACC GGCGACGCCC GCCGCTCGGC CGCACAAAAG
CTGGCCGATC CGAAGACGAA CATCACCACC GGCGTGCGTT ACCTGAGCGA TCTGCTGCGC
ATGTTCTCAG GCAACCTTGA GCTTGTGCTG GCCGCCTACA ACGCGGGCGA GGGCGCCGTG
CAGAAGCACG GCAACGACAT TCCGCCCTAC GCCGAGACGC AGAACTACGT GAAGACGGTG
CTGCAGTTCT ATCGCTACTA CAACCCGGTC GCCGCCGTGC CCGGATTCAT GAATGTGAGC
GCCAACGGCG TCATCGCTAC GCGCAAGCCA GGCCGCACGG GCCGGCCCGC GCGCATCGAA
CTCGTATTGG ACCCCGCCAC CGGCGTGGCC ACGAACCTAC CCCAACATTG A
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| Protein sequence | MKLSVRFAFA LTALALLASQ PARADVYGYI DENGLAHFAA ERLDDRYVLF MKGAAVAGKG
DDKAKDDSAI ALPETELPDT DAYLNASKRD ALDNAAGMRQ RLVRAVLQHP NVPTVEPLIR
QAATKHGIDP ALVKAVIAAE SGFNPQAVSP KGAIGLMQVI PDTGARYGVT GDARRSAAQK
LADPKTNITT GVRYLSDLLR MFSGNLELVL AAYNAGEGAV QKHGNDIPPY AETQNYVKTV
LQFYRYYNPV AAVPGFMNVS ANGVIATRKP GRTGRPARIE LVLDPATGVA TNLPQH
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