| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0802 |
|---|
| Symbol | |
|---|
| ID | 8018432 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 830464 |
|---|
| End bp | 833337 |
|---|
| Gene Length | 2874 bp |
|---|
| Protein Length | 957 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644829581 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002980775 |
|---|
| Protein GI | 241662415 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5373] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.627232 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTGGA TATTCGGAAT CGTGGGGCTG CTGCTCGGAG GCCTGTCGGG GGGCGTCATC
GGGGCGTTCT TTGGGGCGTT GATCGGTCTG GGACTGGCCT CGCTGATCTT GTACATGGAC
AAGCGGGCCA GTGCGCAGTG GGCCAATCCA CCCGACGTTC CGGGCGCAAC GAGCGCGGCG
CCAGGCCATG CGGCCACGCA GGCAGCCGTG TCGCCGCCGC CCGCGACGCT GCAGGAGCGG
GTGGCGCGGC TGGAGCACGA GGTTTCGCTC CTGCGCCGGC AACTGGCTGA AATGAAAGGC
GGAACGTTCG TCGCGCCTGC CGATGTGGAA CAGGCAGCCG CAGAGGTGCC ACCGGTCGTG
GCCGAGGCAT TGCCGCCCGT GGACACGCCT GCGGTGCCTG TGCCCGTGTC CATGCCTGCG
CCGCAGGTTG CGGTTCCGCA GCCAATGCCT CAATCTGCTG CGCAACCCGT GCCCGTCTTG
GCACCGCACG AGCCCGATTG GGTCGAGCGC GCCGTGGGCG CTGCCCGCGA CTGGCTGCTG
GGCGGCAACA GCGTGGTGCG GGTCGGCATT CTGGTCCTGT TTTTCGGCGT GGCGTTCCTG
CTCAAGTACG CGGCGGACAA TAGCCTGCTG CCGGTCGAGT TCCGGCTGGC GGGTGTGGCG
GTCGGGGCGA TCGTGCTGCT CGGCATCGGT TGGCGCCTGC GCGAAAAGCG TCCGGGCTAT
GCGCTCGTGC TGCAGGGCGG CGGGGTCGGC GTGCTTTATC TGACGGTGTT TGCTGCGACG
CGCGTGGTGC CGTTGCTCAG CCCTGGGATG GCGTTTCCGC TGCTGGTGCT GATCTGCGCG
CTGGCCGCCG GGCTGGCGGT CAAGCAGAAC GCGCCGGCGC TCGCCTTTAC CGGCAGCGCG
GGCGGATTCC TGGCGCCGAT TCTGATCTCG ACTGGACAGG GCAGCCACGT AGCGCTGTTC
AGCTATTACG CACTGCTCAA CGCAGGCATC TTCGCCATTG CGTGGTTCCG GGCGTGGCGG
GCGCTGAATC TGCTCGGCTT TGTCTTTACG TTCGGCATTG CCACGGCGTG GGGCGTGCTG
CGCTATCAGC CATCGTTGCT GGCGAGCACC GAGCCGTTCC TGATCCTCTT CTTCCTGATG
TATGTGGGCA TTGCGCTGCT GACCGCGCTG CGCCGCCATG TCAGCCTCAC CAACTACGTT
GACGGCACGC TGGTGTTCGG CACGCCGCTG GTGGCAATGG GTTTGCAGAC TGGGCTGGTG
CACCACATTC CGTTTGCGAT GGCGTGGAGC GCCACCGCGC TGGCCGCGTT CTATCTGGGG
ATTGCGGGCT GGCTGGCGCG GAGGCGTGCC AGCCTTGGCC TGCTGTACGA GGCGATGTTC
GCGCTGGGGG TGATCTTCAT CACGCTGGCG ATCCCGCTGG CTTTCGATGG GCGCACCACC
AGTGCGGTCT GGGCGCTGGA AGGGGCCGCT GTGGTGTGGC TGGGCGTGCG CCAGCAGCGG
CGGCTGGCGT TGGCGGCAGG CGTGCTCCTG CAACTTGCGG CGGGCGCCGC CTTCGCCGTG
GATGCCGCAT TCGATTGGGC ACCCCAGCAC GGGTGGGCTG TGCTCAACAG TCGCTATATC
GGCGGGGTTT TGATAGCGCT GGCAGGCGTG TTCAGTGGGT GGCGCCTGCA CGGCAAGGCG
GAGGCGCGTA CGTGGCTGAA GGCGGCGCCG GTGCTCGGCA TTGCTGCGTC GGTGTGGGGC
TTGCTGTGGT GGCTCGGCAG CGGTAGCAAC GAGATTGACC GCTGGGCCTG GCGCATCGCC
ACGAAGACCG TCGACCGGCC GGACATTCCG CTGTATGCCG CCTTTGCCGT GCTGACGGCG
TGGGCTGCGC ACGGCCTGCG CCGCAAGCTC GCTTGGGCTT TGGCTGAATG GCCCGCGCTG
GCGCTGTCGC CGGTGCTCGC GTTGATTTCT CTGGCGGCAA TCGAACACTG GGCGCCGTCG
CCGCTGGCGG GTTGGGGCGG GCTGGTTTGG ATTGCCGCGG TTGTGCTGAC CTTCGTGCTG
CTGCACCGCC AGCAGCATGA CGTGAAAGAC CGCATCCTCG CGCCGCTGCA TACCGTGCTG
TTCTGGCTGA TCTGCGGCTT ACTGGCGACG GAAGGCTACT GGCGCCTCGA TGCCTACGTG
CCCGAGGGCA CGTGGAGCTT CGCCGCCTGG GCCTATGCCT ACGGCGCGCT GCTTGCCCTG
CTGGCGGGCG CGGGCTGGCG TATCCGCTGG CCGATCGCCC GATTCGAGCG CGCCTACCTA
CTGTGGGGAG CAGCGCCGCT GACTGCCCTG CTGTGGCTGT GGAGCCTGGC GAGCGCCGCC
AGTGACGGCA ATGCGGCACC GCTGTTCTAC CTGCCGATTC TTAACCCGCT GGACGTGGCG
CAACTGCTGG TCTTCTTCGC TATCGCGTTG TGGATGCGCC GCGTGGCGCT GCAGAAGCTG
GTGCCCGAGC CGATGGTGAT CGGCTACGCC ATCGGCGCGA CGCTGTTCAT CTGGGCCAAC
GCAGTGCTGC TGCGCACGCT GCACCATTGG GCGCATGTTC CATACACGCT GGACGATCTG
GGTGCCTCGA TGCTGGTACA GGCATCGTTG TCGATGTTCT GGACGGTGCT GGCATTGGCG
GTGATGGTGT TTGCCACGCG GCGCGCCAGC CGAGCGCTGT GGTTCACCGG CGGGGCGCTG
CTGGGGGTGA CGGTGGTCAA GCTGTTCCTG TTCGACCTGT CACGCGTCAC GGGTGTCGAG
CGCATCGTGT CGTTTATCGC GATTGGCGTG CTGCTGTTGT TGATCGGCTA TCTGTCGCCG
TTGCCGCCGA AGCCCAAAAC CAGCGCCGAT GCTGGAACCG GAGAGGTCCT GTGA
|
|---|
| Protein sequence | MRWIFGIVGL LLGGLSGGVI GAFFGALIGL GLASLILYMD KRASAQWANP PDVPGATSAA
PGHAATQAAV SPPPATLQER VARLEHEVSL LRRQLAEMKG GTFVAPADVE QAAAEVPPVV
AEALPPVDTP AVPVPVSMPA PQVAVPQPMP QSAAQPVPVL APHEPDWVER AVGAARDWLL
GGNSVVRVGI LVLFFGVAFL LKYAADNSLL PVEFRLAGVA VGAIVLLGIG WRLREKRPGY
ALVLQGGGVG VLYLTVFAAT RVVPLLSPGM AFPLLVLICA LAAGLAVKQN APALAFTGSA
GGFLAPILIS TGQGSHVALF SYYALLNAGI FAIAWFRAWR ALNLLGFVFT FGIATAWGVL
RYQPSLLAST EPFLILFFLM YVGIALLTAL RRHVSLTNYV DGTLVFGTPL VAMGLQTGLV
HHIPFAMAWS ATALAAFYLG IAGWLARRRA SLGLLYEAMF ALGVIFITLA IPLAFDGRTT
SAVWALEGAA VVWLGVRQQR RLALAAGVLL QLAAGAAFAV DAAFDWAPQH GWAVLNSRYI
GGVLIALAGV FSGWRLHGKA EARTWLKAAP VLGIAASVWG LLWWLGSGSN EIDRWAWRIA
TKTVDRPDIP LYAAFAVLTA WAAHGLRRKL AWALAEWPAL ALSPVLALIS LAAIEHWAPS
PLAGWGGLVW IAAVVLTFVL LHRQQHDVKD RILAPLHTVL FWLICGLLAT EGYWRLDAYV
PEGTWSFAAW AYAYGALLAL LAGAGWRIRW PIARFERAYL LWGAAPLTAL LWLWSLASAA
SDGNAAPLFY LPILNPLDVA QLLVFFAIAL WMRRVALQKL VPEPMVIGYA IGATLFIWAN
AVLLRTLHHW AHVPYTLDDL GASMLVQASL SMFWTVLALA VMVFATRRAS RALWFTGGAL
LGVTVVKLFL FDLSRVTGVE RIVSFIAIGV LLLLIGYLSP LPPKPKTSAD AGTGEVL
|
|---|
| |