| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0797 |
|---|
| Symbol | |
|---|
| ID | 8018426 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 825768 |
|---|
| End bp | 827474 |
|---|
| Gene Length | 1707 bp |
|---|
| Protein Length | 568 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644829575 |
|---|
| Product | long-chain-fatty-acid--CoA ligase |
|---|
| Protein accession | YP_002980770 |
|---|
| Protein GI | 241662410 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.058688 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.254571 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACGAC CGCACTTCCA GTTCTGGCCC CGACGTTTGC CGTACAACAT CAGCTCGCCG
CAAACGAGCC TTTGGTACAA CCTGGAAGTG TCGGCGCGAC GCTATCCGGA CAAGGATGCC
GTCATCTTCT ACGGTCGGCA CACCACATTC CACGAACTGC ACGATGACGC GGTGGCCGTA
GCCGGCTGGC TGCAGCAGGT GGCGGGGGTG CAGAAGGGTG ATCGCGTGCT GCTGTATATG
CAGAACTGTC CGCAGTTCAT GGCCGCTTAC TACGGCATCT TGAGGGCCGA TGCGGTGGTC
GTGCCTGTCA ATCCGATGAA CCGGCCCGAA GAGTTCAAGC ATTACGTGAC CGATTCGGGC
GCTGCCACGG TCATCTGCAG CGCAGACCTG GCCGTCAATG TGACGACGGC CAACGCCGAG
CTGCCGGAAG CGCAGCGCAC CAGGCACCTG CTGGTCACGT CGTACGCCGA TGCGCTGCCT
GCCACGTACG AATATCCCGA AGATGCGCCC CCCGCCTGGA TCACCGCTCA GCATCCGGCG
CAGCCCGGCG CCGTTGCATG GAACGACGTG CTCGCGCAGC GCCTTGTGCC CGGCCCGCAC
ACCGCTGGAC CCGACGACCT TGCCGTGATG CCGTACACGT CGGGCACGAC GGGTTTCCCG
AAGGGCTGCA TGCACCCGCA CCGCACGGTG ATGCACAACA TCGTCGGCGG TTCGATGTGG
TCGAACGGGA CGAAGGAAGG CGTGAGCCTG TCGATCATCC CGTTGTTCCA TGTGACCGGC
ATGCAGTACG GCATGAACGC GCCGATCTAC ATGGGTTCGA CGGTCGTGAT GCTGCCGCGC
TGGGATCGAG AGGTGGCGGG GCGACTGATC TCGCGCTACA AGATCACGCA TTGGACGAAC
ATCCCGACCA TGGTGATCGA CTTCCTGGCG AGCCCCCAAC TGGCCGAGTT CGATCTGTCG
AGCCTCGCCT ACATCGGCGG CGGCGGCGCG GCGATGCCGC AGGCCGTGGC CGAGCGCCTG
CTGAAGGATT TCAACCTGGC GTACCAGGAA GGCTACGGCC TCTCGGAAAC CATCGCGCCG
ACGCACAGCA ATCCGGCCGA TCGCGCCAAG CAGCAGTGCC TGGGCATTCC CGTGTTCAAC
ACCGATGCGC GCATCGTCGA TCCGCAGACG CTCAAGGAGT TGCCCCCGGG CGAGGTGGGC
GAAATCATTG TCAGCGGCCC GCAGGTGTTC CTCGGCTACT GGGGCAAGCC TCAGGCCACC
GCCGAGGTCT TCATCGAATT CGAAGGCAAG AAGTTTTTCC GCACGGGCGA CCTTGGCAGG
ATGGACGAAG ACGGCTACTT CTTCCTCACC GACCGGCTGA AACGCATGAT CAACGCGTCG
GGCTTCAAGG TCTGGCCGGC CGAAGTGGAA AGCCTGCTGT ACAAGCATCC CGACGTGCAG
GAGGCTTGCA TTATCGGCAC GCGCGATGCG TATCGCGGCG AGTCGGTCAA GGCGGTGGTG
GTGCTCAAGG CCCACGCCAA GGGCAAGACC ACCGAAGACG ACATCATCAA CTGGGCGCGC
GACAACATGG CGGCCTACAA GTACCCGCGC GTGGTCGAGT TTGTGGATGC GCTGCCCAAG
TCCGGCACGG GCAAGGTGAT GTGGCGCACG CTGCAGGAGC AGGAAAACGC AAGGAATGAG
GCGGCCGAGA AACCGGCCGC CGCGTAA
|
|---|
| Protein sequence | MTRPHFQFWP RRLPYNISSP QTSLWYNLEV SARRYPDKDA VIFYGRHTTF HELHDDAVAV
AGWLQQVAGV QKGDRVLLYM QNCPQFMAAY YGILRADAVV VPVNPMNRPE EFKHYVTDSG
AATVICSADL AVNVTTANAE LPEAQRTRHL LVTSYADALP ATYEYPEDAP PAWITAQHPA
QPGAVAWNDV LAQRLVPGPH TAGPDDLAVM PYTSGTTGFP KGCMHPHRTV MHNIVGGSMW
SNGTKEGVSL SIIPLFHVTG MQYGMNAPIY MGSTVVMLPR WDREVAGRLI SRYKITHWTN
IPTMVIDFLA SPQLAEFDLS SLAYIGGGGA AMPQAVAERL LKDFNLAYQE GYGLSETIAP
THSNPADRAK QQCLGIPVFN TDARIVDPQT LKELPPGEVG EIIVSGPQVF LGYWGKPQAT
AEVFIEFEGK KFFRTGDLGR MDEDGYFFLT DRLKRMINAS GFKVWPAEVE SLLYKHPDVQ
EACIIGTRDA YRGESVKAVV VLKAHAKGKT TEDDIINWAR DNMAAYKYPR VVEFVDALPK
SGTGKVMWRT LQEQENARNE AAEKPAAA
|
|---|
| |