Gene Rpic12D_0789 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_0789 
Symbol 
ID8018418 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp816895 
End bp818517 
Gene Length1623 bp 
Protein Length540 aa 
Translation table11 
GC content63% 
IMG OID644829567 
Productglucose-methanol-choline oxidoreductase 
Protein accessionYP_002980762 
Protein GI241662402 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2303] Choline dehydrogenase and related flavoproteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.211025 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.372024 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCCAAT CTGAACAAAC TCGCCAACAA GCCGATATCG TGGTGGTGGG CTCCGGCGTG 
GCCGGGGCGC TGGTGGCGTA CGAGCTGGCG CGCGCGGGCA AGTCAGTGCT GATGCTCGAA
GCCGGCCCGC GCCTGCCGCG CTGGGAAATT GTAGAGCGCT TCCGCAACCA GGCCGACAAG
ATGGATTTCA TGGCGCCGTA TCCATCGACG GCATGGGCGC CGCACCCGGA ATACGGGCCA
CCCAACAACT ACCTCGTGCT CAAGGGTGAG CATCAGTTCA ACTCGCAGTA CATCCGGGCG
GTGGGTGGCA CGACCTGGCA CTGGGCCGCA TCGACGTGGC GCTTCCTTCC GAACGATTTC
AAGCTGCGCA GCGTGTACGG CATCGCGCGC GACTGGCCGA TCCAGTATCA GGATCTGGAG
CGCTATTACG GCCTGGCCGA AGAGGCCCTC GGCGTCTGGG GACCGAACGA CGAAGACCTC
GGCTCGCCGC GTAGCCAGCC TTATCCGATG ACGCCGCTTC CGCTCTCGTT CAATGAGCGC
ACGATCAAGG AAGCGCTCAA TGCGCACGAC GCGAGCTTCC ACGTGGTGAC CGAACCCGTG
GCGCGCAACA GCCGCCCGTA CGACGGCCGC CCGACCTGCT GCGGCAACAA CAACTGTATG
CCGATCTGCC CGATCGGTGC GATGTACAAC GGCATCGTGC ATGTGGAGAA AGCCGAGCAG
GCCGGCGCAC GGCTGATCGA GAACGCCGTG GTCTTCAAGC TCGAAGTCGG CCCCAACAAG
CGCATCGTGG CGGCGCGGTA CAAGGATTCG AAAGGCGCCG AGCACCGCGT GGAAGGCAAG
TGGTTCGTGC TGGCTGCCAA CGGCATCGAA ACGCCCAAGC TGATGCTGAT GTCGACCAGC
CAGGATTTTC CGAAGGGCGT GGGCAACAGC TCCGACATGG TGGGGCGCAA CCTGATGGAC
CATCCCGGCA CCGGCGTGAG CTTCTATGCC GACCGCAAGC TATGGCCGGG ACGCGGGCCG
CAGGAAATGA CGTCGCTGAT CGGCTTTCGC GATGGGCCGT TTCGCGCCAC GCAGGCTGGC
AAGAAGCTGC ACCTGTCGAA CATCTCGCGC ATCGAGCAGG AAACGCAGCG CATCTTCAAG
GAAGGCAAGC TCATCAAGCC GGCCGACCTC GATGCACGCA TTCGCGACCA GGCCGCGCGC
TACGTGCAGT TCGACAGCTT TCACGAGATC TTGCCGCTGC CCGAGAACCG CATCGTGCCG
AGTGCGACGG AAGTGGACGC CATCGGCATT CCACGCCCCG AGATCACGTA CCACATTGAC
GATTACGTCA AACGCAGCGC CGTGCATACG CGGGAGGTCT ACGCGACGGC AGCCCAGGTA
ATGGGCGGCA CCAATGTCGA ATTCCACGAC GACTTCGCAC CCAACAATCA CATCACCGGC
GCAACCATCA TGGGGGCCGA TCCGAAAGAC TCCGTGGTCG ACAAGGATTG CCGGACGTTC
GACCATCCGA ATCTGTTCAT CAGCAGCAGT TCCACCATGC CGACGGTGGG CACCGTCAAC
GTGACGCTGA CCATCGCGGC ACTGGCCCTG CGGATTGCCG ATCAACTGAA GCAGGAGGCG
TGA
 
Protein sequence
MAQSEQTRQQ ADIVVVGSGV AGALVAYELA RAGKSVLMLE AGPRLPRWEI VERFRNQADK 
MDFMAPYPST AWAPHPEYGP PNNYLVLKGE HQFNSQYIRA VGGTTWHWAA STWRFLPNDF
KLRSVYGIAR DWPIQYQDLE RYYGLAEEAL GVWGPNDEDL GSPRSQPYPM TPLPLSFNER
TIKEALNAHD ASFHVVTEPV ARNSRPYDGR PTCCGNNNCM PICPIGAMYN GIVHVEKAEQ
AGARLIENAV VFKLEVGPNK RIVAARYKDS KGAEHRVEGK WFVLAANGIE TPKLMLMSTS
QDFPKGVGNS SDMVGRNLMD HPGTGVSFYA DRKLWPGRGP QEMTSLIGFR DGPFRATQAG
KKLHLSNISR IEQETQRIFK EGKLIKPADL DARIRDQAAR YVQFDSFHEI LPLPENRIVP
SATEVDAIGI PRPEITYHID DYVKRSAVHT REVYATAAQV MGGTNVEFHD DFAPNNHITG
ATIMGADPKD SVVDKDCRTF DHPNLFISSS STMPTVGTVN VTLTIAALAL RIADQLKQEA