Gene Rpic12D_0740 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_0740 
Symbol 
ID8018368 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp772088 
End bp772945 
Gene Length858 bp 
Protein Length285 aa 
Translation table11 
GC content64% 
IMG OID644829517 
ProductIntegrase catalytic region 
Protein accessionYP_002980713 
Protein GI241662353 
COG category[L] Replication, recombination and repair 
COG ID[COG2801] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0332591 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.114218 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTTGCAGG TTGCCTCGTC GGCCTATCGG CGCCATGCCG CACGGCTGCG TGATCCGTCA 
CGGCGCAGCG ACCGTGCGCG TCGTGATGAA CGGCTCATGC CGCAAGTCCA GCGAGTGTGG
CAGGAGAACC ATCGCGTCTA CGGCGCCGAC AAGGTCTGGC GGCAACTGAA CCGCGAGGGC
GTGACGGTTG CCCGCTGCAC GGTCGAGCGA TTGATGCGCG CCCAGGGACT GCAAGGTGTG
CGGCGCGGCA AGCGGCTGCG AACGACCATC GCTGACGACG CCGCCAGTCG CCCGGTGGAT
CGCGTCAACC GGCAGTTCCG GGCCGACCGT CCCAATCAGC TCTGGGTCTC GGACTTCACC
TACGTCTCGA CATGGCAGGG TTGGCTGTAC GTGGCCTTCG TCGTCGACGT CTACGCCAGG
CGCATCGTCG GCTGGCGCGT GAGCAAATCC ATGACGACGG ACTTCGTGCT CGATGCGCTG
GAGCAGGCCC TATACGCTCG CCAGCCTGGC AACGACGGTT CTCTGACCCA CCACTCCGAT
AGGGGATCGC AGTACGTCAG CATCCGCTAT AGCGAACGCC TGGCCGAAGC CGGCATCGAG
CCGTCGGTCG GCAGCCGTGG CGACAGTTAC GACAACGCCT TGGCCGAGAC GATCAATGGC
TTGTACAAGG CCGAGCTGAT CCATCGCCGC GCGCCTTGGA AAACCAGGGA ATCCGTCGAA
CTGGCAACAC TGGAATGGGT CGCTTGGTTC AACCATAAGC GCCTGCACTC ATCCATCGGC
TATATCCCGC CCGCCGAGGC TGAGGCAAAC TACTACAACC AACTCGGCAA AACCGCCGAC
GAGGCCGTTT TACTTTAA
 
Protein sequence
MLQVASSAYR RHAARLRDPS RRSDRARRDE RLMPQVQRVW QENHRVYGAD KVWRQLNREG 
VTVARCTVER LMRAQGLQGV RRGKRLRTTI ADDAASRPVD RVNRQFRADR PNQLWVSDFT
YVSTWQGWLY VAFVVDVYAR RIVGWRVSKS MTTDFVLDAL EQALYARQPG NDGSLTHHSD
RGSQYVSIRY SERLAEAGIE PSVGSRGDSY DNALAETING LYKAELIHRR APWKTRESVE
LATLEWVAWF NHKRLHSSIG YIPPAEAEAN YYNQLGKTAD EAVLL