| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0728 |
|---|
| Symbol | tolB |
|---|
| ID | 8018355 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 759942 |
|---|
| End bp | 761246 |
|---|
| Gene Length | 1305 bp |
|---|
| Protein Length | 434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644829504 |
|---|
| Product | translocation protein TolB |
|---|
| Protein accession | YP_002980701 |
|---|
| Protein GI | 241662341 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
|---|
| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00650912 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.160751 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACATGA TGCGAACGAT GTGGATCCCG ATGTTTCGAC GCGCGGCGCA GGCGCTGCTG
CTGACTGCGG CAAGCGTCGG CGTGGCCCAT GCCCAGCTCA ACGTGGAGAT CTCGGGAGTC
GGCGCCAGCC AGTACCCGAT CGCGATCGCC AACTTCCAGG GCGAGGCGCA GGCTCCGCAA
AACCTCTCGG CGATTGTCCG GGCGGACCTG GCGCGCAGCG GCCGTTTCTC GAACGTCGAT
GTGGCCGGGG CAGTCGTCCC GGAAAGCCCG GCGCCTGACC TGGGTGCGTG GAAGTCCAAG
GGCGCCGCAG CCTTCGTGGG CGGCACCGTG ACGCGCAACG GCGACCGCTA CGAAATTCGT
TTCCGCCTGT ACGACACCGC CAAGGGCGAA AGCCTGGGCG GCCTGTCGCT TACGCGTGGC
CCTGGCCAAC TGCGCCTGGC CGCGCATGAA ATTGCCGATT ACATCTACCA GAAGCTGATT
GGCGAGCGCG GTGTTTTTGC AACGCGTCTG TCGTACGTGT CCAAGGTTGG CCGTCGCTTC
CAACTGCAGA TATCTGACTC GGATGGCGCC AACCCGCAGA TCGCGTTGAC GAGCAATGAG
CCGATCATCT CGCCGTCGTG GTCGCCGGAT GGCACCAAAG TCGCGTATGT GTCGTTCGAG
AGCAAGAAGC CGGTGGTGTA CGTGCATGAC CTGGTGGCAG GCCGCCGTAC GGTGATCTCG
AACCAGAAGG GCAACAACTC TGCGCCGGCC TGGTCGCCGG ACGGCCGTCA TGTGGCGGTG
TCGCTCTCGC GCGATGGCAA TACGCAGGTC TACCTGGTCA ACGCCGATGG CTCGGGCCTG
CGCCGCCTGA GCCGCAGCAG CGCGATCGAT ACCGAACCGT CGTTTTCGCC GGATGGCCGG
TACATCTATT TCACCAGCGA CCGCGGCGGT GCGCCGCAGA TCTATCGCAT GTCGGTTGAC
GGCGAAGAGG CGGGCGCTGC GCAACGCGTG ACGTTCAAGG GCAACTACAA CACGAGCCCG
CGCGTGTCGC CGGATGGCAA GCTGCTGGCG TACATTTCGC GCGTGGGCGG TGCCTTCCGC
CTGTACACGC AGGATTTGTC GAATGGCGAT GTGAACGCGT TGACGGACAC CTCTAACGAT
GAATCGCCGA GCTTTGCGGC CAACGGCAAG TTCATCCTGT ATGCCACGCG CGTTGGCGGC
AAATCGGTGT TGGCCGCGGT GTCCACCGAT GGCCGCACGC GTCAGGTTCT TTCCCTCCAG
GCCGGCGAAG TTCGTGAGCC GGCGTGGGGT CCTTTCATGC AATAA
|
|---|
| Protein sequence | MNMMRTMWIP MFRRAAQALL LTAASVGVAH AQLNVEISGV GASQYPIAIA NFQGEAQAPQ
NLSAIVRADL ARSGRFSNVD VAGAVVPESP APDLGAWKSK GAAAFVGGTV TRNGDRYEIR
FRLYDTAKGE SLGGLSLTRG PGQLRLAAHE IADYIYQKLI GERGVFATRL SYVSKVGRRF
QLQISDSDGA NPQIALTSNE PIISPSWSPD GTKVAYVSFE SKKPVVYVHD LVAGRRTVIS
NQKGNNSAPA WSPDGRHVAV SLSRDGNTQV YLVNADGSGL RRLSRSSAID TEPSFSPDGR
YIYFTSDRGG APQIYRMSVD GEEAGAAQRV TFKGNYNTSP RVSPDGKLLA YISRVGGAFR
LYTQDLSNGD VNALTDTSND ESPSFAANGK FILYATRVGG KSVLAAVSTD GRTRQVLSLQ
AGEVREPAWG PFMQ
|
|---|
| |