| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0717 |
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| Symbol | |
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| ID | 8018344 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | + |
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| Start bp | 748616 |
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| End bp | 751984 |
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| Gene Length | 3369 bp |
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| Protein Length | 1122 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 644829493 |
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| Product | Tfp pilus assembly protein tip-associated adhesin PilY1-like protein |
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| Protein accession | YP_002980690 |
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| Protein GI | 241662330 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.441406 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.313915 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGACAC CATCTCCCCT AGTCAAGGCG CTCGCGCTAT TGATCAGCTC GCTGCTGCCG
CTGACGACTA ACGCGGCTCT GCTAACCATC GCGCAATATC CGCTGTTTCT GTCGAGCAAC
ACAGCCACGC CCAATATTTT GGTGGTCTAT GACAACTCGC AGTCCATGGA CGGAACGATG
GCGGGTAAGT TGATCGCGGG CAACGATCCG ACCACACGTG GCAACATTGC GCGCTCGGTG
ATTACGTCGA CCATCTCGAA CTATCGCACC CAATTCAACT GGGGCCTAGC GACGTTCGAT
GCACCGGGCC CCAGCCTGTA CAACACGTAT GCCTACTTCT TTGGGAGCGC CAACACCATG
GTGTTCACAA ATGACTGTGT CAACGGCATT TCCGCATCGA ACGGCGGCCT GCGCTGCGTC
CCGAATCCGC AATCGGGTGC CTCGTATTCG TATTTGACTT ACGAGCTCAG TGGCGATGAT
CCTGCCATCA ACGACGTCTT GTACTACAAC GGTACGTGGC CGTATCCGTG GGCTATTGGC
TTATCAGGGG GGACAACCAG CAATCCCAAT ACCAATTACA ACGGGTGCCA GAACCACGCC
AACGTGTCGA CCTGGAATTC CGGTGACTTC TCGGGTTGCC AGCAAGTTGG CTTTACGCCG
ACCGACGCCG GGTTTCTGCC GGGCAACCCT CCTTACTCAC GAATGATCTG GCTATCGCGT
GCGTGGGGCT ACTACGCCAA CATAAGCGGG GCCGGAAAAA TGCTGGAAGC TGTGCAGGCG
GATTCGCCCT CGCATTACCA GAATCTGATC GATTATCTGG CGCCGGAGAC AAACTCAAAT
TCAGCAGCGA GCGGCCACAG CAAGCTCGAA ATCAAGAACG GGGCGGTGGC TACGCCTCTC
TCTGGCAGTC TGCAAACGGC GAGGAGTTAC TTCGCGGGCT CGCAGACTGG CTATTCGACG
CCTGTGACTC AAAGTTGCCA GAAGAACTTT GTGCTGTTAG CCACCGATGG CAACCCCACC
GGCAAGACCG ATGGTTCGAT GTGGGCGCTT TCCGATCAGC AAAGCACCTA TAACTCGAGC
ACTGGACAGT GGACGTTCTC CAACGCCGCG AACGATGTGT TCAGTCAAAT CACGGCGTTA
CGCAGTACGA GCGTTAAGGG TTATACGAGT CCCTTTGACA TTCAGACCTA CGTGGTCGGG
ATGGGTAGCA CGGTGTCCAA CCCGGCTTCG GTAGCTGCGC TCAACCAAAT GGCGAAGCTC
GGGGGGACGG GCAATGCTTA CCTGAGCACG GATCCCGCAA CCCTGCAGCA GCAGTTCCAG
AGCATCGCGG CGGACATTAC CACCAAGGTG GCAGCGGCTT CAGCCGTTTC CCTGAACGCG
GGTTCCTGGG GGTCAGGCAC TGCCTTGTAC CAGGCCAAGT TCAGCAGCGC GGACTGGTCG
GGCCAGTTGC TTGCATATGC CATTAACTCG GACGGTTCGA TCGGTAGCCA ACTCTGGGAT
GCCGGCCAGC AGATCAATTC ACAGAACTGG GATACCGGGC GCCAGATCCT GACGTACAAG
CCGTCTGCGG CTCTTGGGTC TCGCGGTATT CCGTTCCGAT GGCCTGTATC GCCGGGTTCG
CCGAAGGCAA CCGAGATGGA CGCGGCGCAA TCGACCAAGC TGAACTACAA CGCCAGCCAG
ACCACCAACG ATGGCTATGG CTCGCAGCGT GTGACCTATC TGCGTGGCAA CAATGCCAAC
GAAGCCAATA CTTGTGGGTC CTGCACACCT TCGTTTCGCA ATCGTCCGAC GAGCAAGCTG
GGCGACATCA TTCACTCATC GCCGAACTAT GTCGGCGCGC CTGCGTTCAA CTATCCAGAC
AACATGGAGA GCGCCCCTTA CTCCGCATTC GTATCGACTT GGCGCAATCG AACGCCGATG
ATCTACGTCG GAGCCAATGA CGGCATGCTG CACGGCATCA ATGCGTCTAC AGGGAAAGAG
TCGATGGCCT ATGTTCCGGC GGCCATCTAC AGCAACCTCA GTATGCTGAC CGCTCCGACC
TACACACACC AGTACTTCGC GGACGGCTCC GTCACGGTGG GGGACACCTT CTATAAGAGC
GGGTGGCATA CGTTGCTGTC AGGCGCGCTG GCCGGTGGAG GACAGGGCAT TTTCGCGCTC
GACGTCACCG ATCCGTCGAA GTTCACCGAG TCGACTGCGA GCCAGGTCGC GCGCTGGGAA
TTCACCGACG CGAATGACGC AGACATGGGC TATAGCTTTG GTCAACCGTT GATCGTCAAA
ACAAACAACG GAAGGTGGTC CGTTATTGTG GCCAATGGTT ACAACAGCAC GCAGTCTGAT
GGTGCGGCGA GCACGACCGG CCACGCAGTG CTGTTTGTGT TGGATGCTGA AACCGGAGCG
GTCACTGCAA AGATTGATAC GAACGCTGGC ACTACTGCTG CGCCAAATGG CCTGTCAGGA
CCTGTCGCAG TTGATACCAA CGGGGATGGC ATTGCCGACG TTGTTTATGC CGGAGATCTG
GCGGGCAACA TGTGGAAGTT CGACCTGTCG AGCAGCACGG TCAGCAATTG GGGGGTTGCA
TTTGGTACCT CCGGCAGTCC GCAGCCTTTG TTCAGTACGG GGGGGCAGCC GATTACGGTA
CGCCCGGACG TGACTCGAAA TTTGCAAGGT AACTACCTCC TGGTCTTTGG CACGGGGCAG
TACTTCACAA CGACCGATAC AACCTCGACG GCTGGACAGA CCTTCTACGG CATCATCGAC
AAGGGCGCCA CGATCAGCGG CCTGTCTAAT CTACAGCAGC AATCGGTGTT GGGCACAACA
ACGGGTCCCG ACGGCAACAC GTATCGCATC ACGACACACG CCGTAGGAGC GCCAACCTTG
GACGCGCTTC GGTCCGGCGA CAATGCAATT TCACTTGGGT CCTACAACAG CTCGAAGCTC
GGTTGGTACA TCAACTTGCC GACTACCGGA GAGCGTGCTG TGACAGATGC GACTATTCGT
TCGGGTCGTG TGATTTTTAA CACTGTCATC CCGTCCACCG CCCAATGCAG CGCCGGTGGT
ACCGGCTGGG TGATGGAGCT GGATGTCTTT ACGGGCAACC GTCTGGATAG TCCGACCTTC
GATACCAATG GCGATGGAGT CATCAACAAC TCGGATCTAC TCCAATATGG CGGTTCGTCC
GCCAATACGA GTGGTCGACA AGTCGGCTCG ATTCCCGCTG CTCCGGGCTT TTTGCAGCCT
ATTCAAGCAC CGGGCGCCTC GCCATTTGAA AACAAATACG TCAATACTTC GGCGGGTGCC
ATTCAAGTGA TCGGTGAAAC GGCAGGTAAG GGTTCCCGTG GCCGTGTTGC ATGGCGGCAA
TTGAACTGA
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| Protein sequence | MKTPSPLVKA LALLISSLLP LTTNAALLTI AQYPLFLSSN TATPNILVVY DNSQSMDGTM
AGKLIAGNDP TTRGNIARSV ITSTISNYRT QFNWGLATFD APGPSLYNTY AYFFGSANTM
VFTNDCVNGI SASNGGLRCV PNPQSGASYS YLTYELSGDD PAINDVLYYN GTWPYPWAIG
LSGGTTSNPN TNYNGCQNHA NVSTWNSGDF SGCQQVGFTP TDAGFLPGNP PYSRMIWLSR
AWGYYANISG AGKMLEAVQA DSPSHYQNLI DYLAPETNSN SAASGHSKLE IKNGAVATPL
SGSLQTARSY FAGSQTGYST PVTQSCQKNF VLLATDGNPT GKTDGSMWAL SDQQSTYNSS
TGQWTFSNAA NDVFSQITAL RSTSVKGYTS PFDIQTYVVG MGSTVSNPAS VAALNQMAKL
GGTGNAYLST DPATLQQQFQ SIAADITTKV AAASAVSLNA GSWGSGTALY QAKFSSADWS
GQLLAYAINS DGSIGSQLWD AGQQINSQNW DTGRQILTYK PSAALGSRGI PFRWPVSPGS
PKATEMDAAQ STKLNYNASQ TTNDGYGSQR VTYLRGNNAN EANTCGSCTP SFRNRPTSKL
GDIIHSSPNY VGAPAFNYPD NMESAPYSAF VSTWRNRTPM IYVGANDGML HGINASTGKE
SMAYVPAAIY SNLSMLTAPT YTHQYFADGS VTVGDTFYKS GWHTLLSGAL AGGGQGIFAL
DVTDPSKFTE STASQVARWE FTDANDADMG YSFGQPLIVK TNNGRWSVIV ANGYNSTQSD
GAASTTGHAV LFVLDAETGA VTAKIDTNAG TTAAPNGLSG PVAVDTNGDG IADVVYAGDL
AGNMWKFDLS SSTVSNWGVA FGTSGSPQPL FSTGGQPITV RPDVTRNLQG NYLLVFGTGQ
YFTTTDTTST AGQTFYGIID KGATISGLSN LQQQSVLGTT TGPDGNTYRI TTHAVGAPTL
DALRSGDNAI SLGSYNSSKL GWYINLPTTG ERAVTDATIR SGRVIFNTVI PSTAQCSAGG
TGWVMELDVF TGNRLDSPTF DTNGDGVINN SDLLQYGGSS ANTSGRQVGS IPAAPGFLQP
IQAPGASPFE NKYVNTSAGA IQVIGETAGK GSRGRVAWRQ LN
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