| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0702 |
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| Symbol | |
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| ID | 8018329 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | + |
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| Start bp | 735908 |
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| End bp | 737092 |
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| Gene Length | 1185 bp |
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| Protein Length | 394 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644829478 |
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| Product | Lytic transglycosylase catalytic |
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| Protein accession | YP_002980675 |
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| Protein GI | 241662315 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.417607 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGGTT GGAAAACCCT TCATTCTTCC GGGATCGGAT CGGCGCTGCA ACGCCGGCTC
GTCGCCCCGG TTGGCCGCCG CCTCGCGCGT GCCGGTCAAG TTGCGCTGCC TCGTAAGCTG
CGCATGGAGT TGAACGCAGG GGGCGCCGCC GCGTCCCGCA ATGAGTTGCA TCCTGGCGTA
CTGCTGGTGT TCCGCAGCGG GCATGTCGTG CTCAATAGCA TCGGCTTGCT GGCGGTCGCG
GCCGCAGTTG CACTCTCGCT GAACAGCGAG TGGCGTGCCA CGGTCGCTCA ACGCGTGCTG
CATTTCACGC CGGGTGTCGA CACCAGTGTC GCCTCGGCAA ATCCGTCACC CGCAATTGCG
GCTGGCGTGC AGCCGGTGGC TTTTGCACCG ACAGCGCCGT CCGCCGGCAC GGGCGCCGCT
CAAGCTGTCG CTCCGGCGAC GGCCCAGGGT GGCACGGTCG CGGCGGCAGG TTGGGACGCG
CTTTCGAAGG TGCCGTCCGT GGCCGAGTTG GCTGCCCAGA TTCCGAACAC GCAAGTCGTC
CGCGACGCGC GTGAGTCGGC AACCGCCGGT ACCCCGCGAG AGCAGGCTGC CGTGGCGGAA
TACATTGCCC GCAAGTATCG CGTGGCGGCT ACAGCCACCG GCCAGCTGGT GAAGGCTGCG
TATCAGACCG GCAAGGAAGT CGGCCTGGAT CCATTGCTCA TCCTTGGCGT GATGGCGATC
GAGTCCAGCT TCAACCCGTT CGCCGAGAGC GGTATGGGTG CGCAGGGCCT GATGCAGGTC
ATGACGAAGG TCCACCAGGA CAAGTACGAA GTGATGGGCG GCGTCGGTGC AGCGCTCAAC
CCGTACGCCA ACATCAAGGT CGGTGCGCTG GTACTGAAGG ATTGCATCGC ACGCGCAGGA
TCGATCGAGG GCGGCCTGAA GCTGTATGTC GGGGCCGTGA CCCAGGGCGA TGGCGGCTAC
GGCGGCAAGG TGTTGCAGGA GCGTTCGCGC CTGCGCATGG TCGCGACGGG CCATCGTTCG
CCGATGACTG CGGCATCCGA ACGTGAACCG GTGAAGCCGG TGGCGACAGC CGCGCCCGTG
GCGCAGGCTG ACGTGAAGAC GCAAGCCGCC AAGCCGACCG ACAAACCGGC CCCACGCCAA
CAGGAAGAGG CGCGTCTGGA CAGTAAGTCG CAGGGCCAAG CCTGA
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| Protein sequence | MNGWKTLHSS GIGSALQRRL VAPVGRRLAR AGQVALPRKL RMELNAGGAA ASRNELHPGV
LLVFRSGHVV LNSIGLLAVA AAVALSLNSE WRATVAQRVL HFTPGVDTSV ASANPSPAIA
AGVQPVAFAP TAPSAGTGAA QAVAPATAQG GTVAAAGWDA LSKVPSVAEL AAQIPNTQVV
RDARESATAG TPREQAAVAE YIARKYRVAA TATGQLVKAA YQTGKEVGLD PLLILGVMAI
ESSFNPFAES GMGAQGLMQV MTKVHQDKYE VMGGVGAALN PYANIKVGAL VLKDCIARAG
SIEGGLKLYV GAVTQGDGGY GGKVLQERSR LRMVATGHRS PMTAASEREP VKPVATAAPV
AQADVKTQAA KPTDKPAPRQ QEEARLDSKS QGQA
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