Gene Rpic12D_0700 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_0700 
Symbol 
ID8018327 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp732218 
End bp733729 
Gene Length1512 bp 
Protein Length503 aa 
Translation table11 
GC content64% 
IMG OID644829476 
Productsuccinic semialdehyde dehydrogenase 
Protein accessionYP_002980673 
Protein GI241662313 
COG category[C] Energy production and conversion 
COG ID[COG1012] NAD-dependent aldehyde dehydrogenases 
TIGRFAM ID[TIGR01780] succinate-semialdehyde dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.618227 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGAAG CACTCGACTC ATCCCGCACA GCCTCCAACG CGCTGGAGCG CATCACGGAC 
CGCACCCTCG TCAAGACGCA GTCCTATGTT GACGGCGCCT GGGTAGGCGC GACAGACGGC
GCGACGTTTC CCGTCTACGA CCCTGCCACC AACGCACACC TGGCCGACGT CGCCAATCTC
GGCCACGCAG AAACGCTGCG CGCGATCGAC GCGGCAAATG CGGCGTGGCC CGCGTGGCGC
GAGCTGACCG GCAAGGAGCG CGCTGGCCTG ATGCGCCGCT GGTTCGAGCT GCTGATCGCC
AACGCCGACG ACCTCGCCGC GCTGATGACG GCTGAACAAG GCAAGCCGCT GGCCGAAGCC
AAGGGCGAAA TCGTCTACGG CGCGTCGTTC ATCGAATGGT TTGCCGAAGA GGCCAAGCGC
GTCTCCGGCG ACGTGATGGC CAGCACCTGG CGCGACAAGC GCATGGTCGT GTTGAAGCAG
CCGGTCGGTG TGTGCGCATC CATCACGCCG TGGAACTTCC CGCTGGCGAT GATCACCCGC
AAAGTCGCGC CGGCCATGGC GGCAGGCTGC ACCATCGTCA TCAAGCCGGC AGAACAGACG
CCGCTTTCCG CGCTGGCGAT GGCCGAACTG GCGCACCGCG CAGGCATTCC CAAGGGCGTG
GTGAACGTGG TGACGGGCGA TGCAGACCGC TCGATCGCCA TCGGCAAAGC CCTGTGCGAA
TCGCCGATCG TGCGGCATCT GTCGTTCACG GGCTCGACCC CGGTCGGTCG CATCCTGATG
CAGCAATGTT CGCCGACGGT GAAAAAGGTG GCGTTGGAAC TGGGTGGCCA TGCGCCGTTC
ATCGTGTTTG ACGACGCCGA CATCGATGCC GCCGTGGAAG GCGCAGTGCA GTCGAAATAC
CGCAACGCCG GCCAGACCTG CGTGTGTACG AACCGTTTCT ATGTCCATGC CTCGGTGTAC
GACACGTTTG TCGAAAAGCT CTCGGCCAAG GTGCGCGGCA TCAAGGTCGG CAACGGTTTC
GAATCGGGCG TAGTGCAAGG CCCGCTGATC GACGACCAGG CCGTGGAAAA AGTGCAGCGC
CACATCGACG ACGCGACGCA GAAAGGCGCA CGCCTGACCG CCGGCGGCAA GCTGATGCAG
GGCTTCGGCT CGCAGCGTTT TGTCGAGCCC ACCGTGCTGG CGGACGCCAC GCCCGACATG
CTGATTGCGC GCGAAGAGAC CTTCGGCCCG GTCTCCGCCA TCTTCAAATT CCAGGACGAA
GCGGAAGTCG TGCGCCTGGC CAACGACACC GAATTCGGCT TGGCTTCGTA CTTCTTCAGC
CGCGACATCG GCCGCATCTG GCGCGTGGCC GAGCAGCTCG AATACGGCAT GGTTGGCATC
AACACGGGGC TGATCTCGAA CGAGGTCGCG CCGTTTGGCG GCATCAAGCA GTCGGGCCTC
GGCCGTGAAG GTTCGGTCTA CGGCATCGAC GAGTATCTCG AACTCAAGTA TCTGTGCATG
GGCGGCATCT GA
 
Protein sequence
MAEALDSSRT ASNALERITD RTLVKTQSYV DGAWVGATDG ATFPVYDPAT NAHLADVANL 
GHAETLRAID AANAAWPAWR ELTGKERAGL MRRWFELLIA NADDLAALMT AEQGKPLAEA
KGEIVYGASF IEWFAEEAKR VSGDVMASTW RDKRMVVLKQ PVGVCASITP WNFPLAMITR
KVAPAMAAGC TIVIKPAEQT PLSALAMAEL AHRAGIPKGV VNVVTGDADR SIAIGKALCE
SPIVRHLSFT GSTPVGRILM QQCSPTVKKV ALELGGHAPF IVFDDADIDA AVEGAVQSKY
RNAGQTCVCT NRFYVHASVY DTFVEKLSAK VRGIKVGNGF ESGVVQGPLI DDQAVEKVQR
HIDDATQKGA RLTAGGKLMQ GFGSQRFVEP TVLADATPDM LIAREETFGP VSAIFKFQDE
AEVVRLANDT EFGLASYFFS RDIGRIWRVA EQLEYGMVGI NTGLISNEVA PFGGIKQSGL
GREGSVYGID EYLELKYLCM GGI