| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0607 |
|---|
| Symbol | |
|---|
| ID | 8018233 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 642649 |
|---|
| End bp | 643416 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644829386 |
|---|
| Product | transcriptional regulator, TetR family |
|---|
| Protein accession | YP_002980584 |
|---|
| Protein GI | 241662224 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.118397 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.590685 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGCTGGC TGACGCCTAC CGCCGTGACC GATCAAGATT CCGACTCCTC CTCCAAACGC
TGGACGCGCC GCAAAGAGGC CCGCCCCCAA GAACTGGTCG CCGCCGCGCT GAACCTGTTC
GTGGCGCGCG GCTATGCGGC CACGCGGCTG GAAGACGTGG CGTCGGCGGC CGGCGTGTCC
AAGGGCACGG TGTACCTGTA CTTCGCCAAC AAGGAAGAGC TGTTCAAGGC CGTGGTGCAG
GAAAACCTGG TGCCCGCGCT GGCCGAGGGC GAGGCCCTGA TCGACAGTTT CGACGGCACC
AGCGAAGCGC TGCTGCATGA GATCCTGATG GGCTGGTGGG AACTCATCGG CGAATCGCCG
GCTTCGGGTC TCACCAAGCT GCTGATGGCC GAGTCGGGCA ACTTTCCCGA CCTGGCGCAG
TACTACCACG AAGAAGTCAT CGACCGCTGC GACCGCCTGT TCGCGCGCAT CCTCGAACGC
GGCATGGCCC GCGGCGAATT CCGTGACGTC AACATCGACC TCACCACGCT GACCATGGTC
GCGCCGATGA TCTTCCTGAT GATGTGGAAG CATTCGTTCG GCCCCTGCTC GCACCGGGAG
CTGGAACCGA AGACGTTTAT CGCCCACGTC GTGTCGCTGC TGCTGCACGG CGTGCTACGC
AATCCGGCGA CCGGCGCGGT GATTCCGCCA CCACCCGCCC TCACCGCGCA ACCGTGGCGC
CCCTTGCCCG AGGGCGGCAA CAACCCCGAT CAAGGCGCCT CGTCATGA
|
|---|
| Protein sequence | MRWLTPTAVT DQDSDSSSKR WTRRKEARPQ ELVAAALNLF VARGYAATRL EDVASAAGVS
KGTVYLYFAN KEELFKAVVQ ENLVPALAEG EALIDSFDGT SEALLHEILM GWWELIGESP
ASGLTKLLMA ESGNFPDLAQ YYHEEVIDRC DRLFARILER GMARGEFRDV NIDLTTLTMV
APMIFLMMWK HSFGPCSHRE LEPKTFIAHV VSLLLHGVLR NPATGAVIPP PPALTAQPWR
PLPEGGNNPD QGASS
|
|---|
| |