| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0581 |
|---|
| Symbol | |
|---|
| ID | 8018207 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 617032 |
|---|
| End bp | 618180 |
|---|
| Gene Length | 1149 bp |
|---|
| Protein Length | 382 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 644829360 |
|---|
| Product | DegT/DnrJ/EryC1/StrS aminotransferase |
|---|
| Protein accession | YP_002980558 |
|---|
| Protein GI | 241662198 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0399] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis |
|---|
| TIGRFAM ID | [TIGR03588] UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCCCT ACGGCCGGCA GGACATTTCG GCGGACGATA TCGAGGCGGT AGTTGCTGTC
CTCAAGTCCG ATTTCCTAAC GCAGGGTCCG GCGGTTCCGG CATTCGAGGC CGCCGTTGCC
TCCTATGTGG GTGCTGCGCA TGCCGTCGCC GTTAACAGCG CGACATCGGC GCTCCACGTC
GCCTGCATGG CGTTGGGTGT CGGGCCGGGC GATGCTGTTT GGACAACACC GAATACGTTC
GTTGCATCGG CCAACTGCGC TCGCTATTGC GGCGCAGATG TCGATTTTGT TGATATCGAT
AGCCGCACTT ACAACATGTG CGCCGTGTCG CTGGAGGCCA AACTCAAGGC TGCAGCCGCA
TGCGACGCTC TCCCCAAGGT TGTAATTCCG GTCGCCTTTG CCGGACAGTC CTGCGACATG
CGAGCGGTCC GTGCGTTGGC TGAGACGTAC GGTTTCGCCG TTATTGAGGA CGCTTCGCAC
GCGATTGGTG GCCGTTACCT GGGCAAGCCA ATTGGCTGTG GCGACTATGC TGACATCACC
GTATTCAGCT TCCACCCTGT CAAAGTCATC ACGACGGCCG AGGGTGGGTT GTGCGTGACC
AATCGGGACG ATCTGGCGCA GGCGATGCGC AAAGCGCGCT CGCACGGTAT TACGCGTGAG
CAGGCTGAAA TGACGGAGCC GTCGGATGGC GCCTGGTACT ACCAGCAGGT CACGCTTGGG
TACAACTACC GCATGACCGA CATGCAGGCG GCGCTGGGTG TCAGCCAGAT GACTCGCCTC
GATGCCTTTG TTGCACGCAG ACACCAACTG GCTCGTCAGT ATGATGAGCT GCTCGCGGGG
ATGGAGTTGG TTGTGCCATT CCAGCATCCG GATGGCTTGT CTGGCTTGCA TCTGTATCCG
ATCGTTTTGA ACGATGCCGC GCGGCGCAAG GCGGTATTCG ATGCCCTGCG CGCAGCTGGT
ATCCATGTCA ACGTGCACTA CATTCCGGTA CATACACAGC CGTACTATCG CGAACTTGGC
TTCAAGCGAG GGGATTTCCC TAGGGCTGAG GCTTATTATG CAGGTGCTAT CAGTCTGCCG
ATGTTCCCTG GCTTGACCGA CCAGCAGCAA GAGTTCGTTG CCAACACGTT GCGCGAGATA
CTCACATGA
|
|---|
| Protein sequence | MIPYGRQDIS ADDIEAVVAV LKSDFLTQGP AVPAFEAAVA SYVGAAHAVA VNSATSALHV
ACMALGVGPG DAVWTTPNTF VASANCARYC GADVDFVDID SRTYNMCAVS LEAKLKAAAA
CDALPKVVIP VAFAGQSCDM RAVRALAETY GFAVIEDASH AIGGRYLGKP IGCGDYADIT
VFSFHPVKVI TTAEGGLCVT NRDDLAQAMR KARSHGITRE QAEMTEPSDG AWYYQQVTLG
YNYRMTDMQA ALGVSQMTRL DAFVARRHQL ARQYDELLAG MELVVPFQHP DGLSGLHLYP
IVLNDAARRK AVFDALRAAG IHVNVHYIPV HTQPYYRELG FKRGDFPRAE AYYAGAISLP
MFPGLTDQQQ EFVANTLREI LT
|
|---|
| |