| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0566 |
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| Symbol | |
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| ID | 8018192 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | + |
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| Start bp | 602351 |
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| End bp | 603097 |
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| Gene Length | 747 bp |
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| Protein Length | 248 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644829345 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_002980543 |
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| Protein GI | 241662183 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.472226 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGATT CTTCCCGTCT TCCGCTGTAT CGCATCCTCC AATCCCAGGG CTTCGGCACC
CGCCGCTATT GCAAGGACCT CGTCCTCGCG GGGCTGGTCT GCATCAACGG CGTCGAGATG
GAAAGCCCCG ATGCGCTGGT CGATACCGCC GGCCTGGTCC TGGACGTCGA CGGCGAACGC
TGGGCATACC ACGCCCGCGC CTATCTGATG CTCAACAAGC CGGCCGGCGT GGAGTGCTCG
CAAAAGCCGA AACATCATCC GAGCGTGTAC ACGCTGCTGC CGGTGCCGCT GCGCGAGCGC
GCCGTGCAGT GCGTCGGGCG GCTCGACCAG GACACCACGG GGTTGCTGCT GCTGACCGAC
GACGGCCAGT TCGTCCACAC CATCACCAGC CCGCGCCACC AGGTGCCCAA GGTGTACGAG
ATCACCACCG CCGAGCCCGT GACCGAGGCG CAGATCGCCC AGCTGTGCGC CGGCGTGCTG
CTGGCTGACG AAAATGAAAA CGTTGCCGCC GCCTGGGCCG AGCGCGTCGG CACGCACCAC
CTGCGCATGG CGCTCACGCA GGGCAAATAC CATCAGGTGA AACGCATGGT GGCCGCCGCC
GGTAACCATG TGGTCGGATT GCACCGCAGC GCCATTGGCG GGTTGTCGCT GGGGGATCTG
GCGCCGGGCG AATGGCGCTG GCTGGAAGCC GCCGATCTGG AAGCGCTGAA CACCACGCCA
CCCCATGCAA CCGGGTCAAG TGCCTGA
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| Protein sequence | MADSSRLPLY RILQSQGFGT RRYCKDLVLA GLVCINGVEM ESPDALVDTA GLVLDVDGER
WAYHARAYLM LNKPAGVECS QKPKHHPSVY TLLPVPLRER AVQCVGRLDQ DTTGLLLLTD
DGQFVHTITS PRHQVPKVYE ITTAEPVTEA QIAQLCAGVL LADENENVAA AWAERVGTHH
LRMALTQGKY HQVKRMVAAA GNHVVGLHRS AIGGLSLGDL APGEWRWLEA ADLEALNTTP
PHATGSSA
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