| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0548 |
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| Symbol | |
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| ID | 8018174 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | - |
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| Start bp | 579660 |
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| End bp | 581471 |
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| Gene Length | 1812 bp |
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| Protein Length | 603 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644829327 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_002980525 |
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| Protein GI | 241662165 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACCGAC TCGTTCATCG CAGCGCCAAG CGCTGCATCG GACCGTACCT GACACGCAAG
GCGTTTGCGG CGGCCGCGCT GGGGGTGCTG TGCGTGGGTA TGGCGCATGG CCAGGTGGGC
GTCGAGAGCG CCATCCTGAC CAACAATGCG GCAGCACCCG CCAAGCCGCT GAAGATGGCG
GCCAGCGGCC CGATCCAGCT CACGATTGGC AGCCCCGCCA CCGCTGAAGC CAACCGCGAC
TCGGCCGGCA AGGGCCCAAA CTGCACGGGC CCCATGCGTT CGCACAGCGA GGTTACGGTG
CCGGTCGGCA AATCGACGAT GGTGCAACTG CCCGAGCCCG TGCGAAGCCG TACCGTCGGC
AATCCGAACG TCGTGCAGGC GATGCTCGTC TCTCCGCAGA CGCTGTACGT GCTGGGGCTG
GAAGTGGGCT CCACCAACAT GATCGTGCAG GGCCGCAGCG GGTCGTGCAG CGTGGTGGAC
GTGGCCGTCG GTGCCGACCC AGGCGGTCTG CAATCCACGC TGCGCAAGTT GATGCCCGAA
GCCCGGAATG TGCAGGTGTC GGCCGCCGCC GATAGCCTGG TCCTCGGCGG CTCCGTCAGC
GATTCCGTCC AGGCGCAAAA GGTGGTCGAC ATTGCCAACG CCTTTGTCAT GCGCCGCACG
CGCGGCCCCA ACGAGGGTGA GCAGAACGCG ACCGGCCAGG GTGGCCAGCA GCTCCACACG
GCCGGCCCCG GAGCACCGCT GCGCAGCCCG CGCATCATCA ACATGATGAC GGTCGAAGCA
CCCCAGCAGG TCATGCTGGA AGTGAAGGTG GCCGAGGTGT CCAAGACGCT GATCGACCAG
ATGGGCGCCG CATTCAACGC GAACGGCGCG TTCGGTAGCT GGTCTTTCGG GGCCATCGCC
AACTTCCTCT CGGGCTCGAG CGACATCGTC AACTTCAGCA AGGCCAACCA CTTGCCGCTC
AAGTTCGCGC TCGATGCGCA AAAGGGCGAT GGCTTGGTGA AGGTGCTGGC CGAACCGAGC
CTGATGGCCA TCAGCGGGCA AGAGGCCAGC TTCCTGGCGG GCGGTAAGGT GTTCATCCCG
GTGGCGCAGG GCGCTGCCGC CAACGGCGTG GCCACGATCG TTCTGCAGGA AGAAACCTTC
GGTGTGGGCC TGCGCTTCAC CCCCACGGTC ATGGAGAACG GACGCATCAA CCTGAAGGTG
TCGCCCGAGG TGTCGGAACT GTCGCCCACA GGTGTGGCTG TCACCGCGCC CAACAGCAAC
AACACGTCGA TCCTGCCGCT CATCACCACA CGCCGCGCGT CGACCACGCT ACAGGTGCAT
GACGGCCAGA GCTTCGCCAT TGGCGGCCTC ATCAAGAACA ACATCACGGG CAGCCTGAAA
GCACTCCCGG GCATTGGCGA GCTGCCGATC ATCGGTTCAT TGGCACGCAG CACCAGCTTC
CAGCAAGACC AGACCGAGCT GTTGTTCGTG GTCACACCGC GGCTGGTCAA GCCGCTGCCG
GCTCAGTATC CGCTTCCGAC CGACAGCTTC GGAACGATCA ACCGCGGCGA GCTGTACCTC
AACGGCAACA TGGAGGGCCA CGTCCAGGCA CCCGCCAGCC AGCCAACCGC AGTTGCAGCC
CCCGCCGCCA ACCCGGAAAA GGCCGCCGCA GAGCCCGCTG CAGCGCCAGG ACCGTCCGCC
CAAGCTCCGA CGCCTACCAA CGTACCTGCG GCGCCGGCGG CTCCTGTTAC TCCGGTCGCC
CCCGCCGCCA GTACCGCGCC CCGCGATACA CGGCGCTTTG TAGCGACTGG CGAGCAATCC
ACCGGCAACT GA
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| Protein sequence | MDRLVHRSAK RCIGPYLTRK AFAAAALGVL CVGMAHGQVG VESAILTNNA AAPAKPLKMA
ASGPIQLTIG SPATAEANRD SAGKGPNCTG PMRSHSEVTV PVGKSTMVQL PEPVRSRTVG
NPNVVQAMLV SPQTLYVLGL EVGSTNMIVQ GRSGSCSVVD VAVGADPGGL QSTLRKLMPE
ARNVQVSAAA DSLVLGGSVS DSVQAQKVVD IANAFVMRRT RGPNEGEQNA TGQGGQQLHT
AGPGAPLRSP RIINMMTVEA PQQVMLEVKV AEVSKTLIDQ MGAAFNANGA FGSWSFGAIA
NFLSGSSDIV NFSKANHLPL KFALDAQKGD GLVKVLAEPS LMAISGQEAS FLAGGKVFIP
VAQGAAANGV ATIVLQEETF GVGLRFTPTV MENGRINLKV SPEVSELSPT GVAVTAPNSN
NTSILPLITT RRASTTLQVH DGQSFAIGGL IKNNITGSLK ALPGIGELPI IGSLARSTSF
QQDQTELLFV VTPRLVKPLP AQYPLPTDSF GTINRGELYL NGNMEGHVQA PASQPTAVAA
PAANPEKAAA EPAAAPGPSA QAPTPTNVPA APAAPVTPVA PAASTAPRDT RRFVATGEQS
TGN
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