| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0495 |
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| Symbol | |
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| ID | 8018121 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | + |
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| Start bp | 521630 |
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| End bp | 524353 |
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| Gene Length | 2724 bp |
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| Protein Length | 907 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644829275 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_002980473 |
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| Protein GI | 241662113 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.128556 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGCCA CCTCTGCTGA GCGGCCTGAC CGTCCTGAAC CGGATGTGAT CGATCAGGAC
AGCCCCAGGC CGCTGCCGCT CGCTGATGAC CGCTACGAAG CGCTCGTCCG GCAAATGCCG
GATGCGCTGT ACATCGTGGC GGACGACATC ATCGTTTTCG TCAACGAGGC GGGCGTTCGC
CTGTTCGGCG CGCAGACGGC ACGCGACATC GTGGGCCATG AACTGGACGA GTTCGTGCAC
GACAACTCGA TGCACCTCGC CCGCCAGCGT CGGGAGTGGA TGGTCTCGCA CGGTGCAGGC
TTGCCCCCGG TCGAGCAGAC CTTGCTGCGC TGCGATGGCA CGCCGGTGGA GGTCGAGGTG
CTTTCCGCGC CGGTGCAGCT TGGCTGGCGC ACCGCCATTC AGGTGGTGGC ACGCGACATC
ACCCAGCGCA AGCAGGCCGA ACAGGCCCTG CGCGAATCCG AAGCCAATTA TCGTGCACTG
GCTGCCGAAA CCGCACGCGC CAAGGAATTG CTGCGCTGCG AAAAGACCGT GCTCGAACTC
AGCTCGCGCA ACGTGCCGTT GCCCGACCTG CTGGCCGAGG TGTGCCGGCT GGTGGAGGCG
CTGCTCGACG ACGGCGCCAT GTGCTCGGTC CTGCTCAGTG GTGATGGCGA GCACGTTACG
CAGGCCGTGG CACCGTCGCT GCCTTGCACG CTCTCCCAGG TGCTGGTTGG GATCGCGATT
GGCCCTTCGG TCGGTTCATG CGGCACGGCC ATGTTCCTGA ACAAGACCGT GGTGGTGGAA
GACATCGACG CCGACCCGCT CTGGGATGGC TACCGCGACA TCGTTGCGCC GCTCGGATTG
CGCGCGTGCT GGTCGACGCC CATCCGCGGC GACAACGCGC AGATGATCGG CGCGATGGGC
ATCTACTACG ACTCCCCGCG TGCGCCCACG CGCGACGCCA TGGGGTTGCT CGACGGTATT
ACCGACATCA TCGGCGTGGC CGTGCAGAAG GCGCATATCG CGCGTGATCT GAGGGAGAGC
GAAGAACGCT ATCGCCTGGC CGTCGACAAC CTGACCGAAG GCATCGTCGT GCAGGCGGCC
GACGGCACCA TCCTCGCGTG CAACCCGAGC GCGCGGCGTA TTCTCCGGGC GGGCAGCGTG
TCGCCGGTGG GCACCAGCCA CCTGGCGCTG ATGCGGCGCT CGTTGCGTGA AGACGGCAGC
GAGATCCCGG TCAACGAGCG CCCCACGCGC GTGGTGCTGG CCACCGGACG GCCGCTGCTG
GGCTTGACTG TTGGCCTGGA ACTGGTTGAC GGCGATGTGG TGTGGGTGCA CGAAAACGTG
CTGCCCATCG TGCGCCCTGG CGACGATACC CCCTCAGCCG TGCTGATCTC GTTCAACGAT
ATCGGGCCGG CCCGCGCGGC CCAGCAGCAG CTCACTTTCC TCGCGCAGCG TGATGCGCTC
ACCGGCTTGT ACAACCGCGC GTACTTCTCG CAGCGCATGC AGGCGGTGAT GGAGCAGGCA
GCCAGCCAGG CCAACGAGGC GCGCCAGGTC GCCGTGCTGT TCCTCGATCT GGATGGCTTC
AAGAAGGTGA ACGACACGGC TGGCCACGAA GCGGGCGACC ACCTGCTGCG CATCGTCGCG
CAACGGCTGT CGGCCTGCGT ACGCCAGAGC GATACGCTGG CGCGCCTCGG CGGCGATGAG
TTCGTCGTGC TGCTCGACAA TGTGCGCTCG TTGGGGGAAG CGGAGCGCTT GGCCAAGCGC
ATCGTCCATT CGATCGCGCA GCCGTTCTCG ACGAGCGGCA CGGAGTACTA CCTGGGCGCG
TCGATCGGCA TCGCGCTGTA CCCGGAGCAT GGCAACGACG CCGCCACGCT GCTGCGCTGT
GCGGATGCCG CCATGTACAA CGCCAAGCAG AACGGCCGCA ACCAGCATCG CGTGTACACC
GCGCGCCTGT CGCAGCGGGC GCAGCGGCGC TTCCAGCTGG AATACCATCT GCGCCGCGCG
CTGACGGCGG GCGAGCTGTC GTTGCGCTTC CAGCCTATCG TCGACGCCAC ATCGATGGAC
ATCGTCGGTG CTGAAGTGCT GCTGCGCTGG CACAGCACCG AACTGGGCGA GGTGTCCCCC
GCCGAGTTCA TTCCCGTGGC GGAAGACGCC GGACTTATCG GCGACATCGG CGAATGGGTG
CTGGCACAGG CGTGCCGCCA GGCTGCGCAT TGGCGCGCCA CCTGCATGCC GGAGTTCTTC
GTGGCCGTGA ACCTGTCGCC GCGTCAGTTT GGCGAGGGAC TGGTGCCGAC CATCTCGCGC
TGCCTGACCG AAGCTGGCTT GCCCGCGAGC GCGCTCGAAA TGGAGATCAC CGAAGGCCTG
CTCATGCGCG ACACGGCCGC AGTGATGCCG ATGCTCGATG CGCTCACGGC CCTGGGCATT
CGCATCTCGA TCGATGATTT CGGCACGGGC TATTCGTCAC TGTCGTATCT GCAACGCTTC
CCGATCGACA ACCTGAAGGT GGATCGCTCG TTCGTCTCGG GCATTCCGCG CCATCGCGAT
TCGGTGGTGA TCTCGCGCGC CGTGGTCGCG ATGGCCGCGT CGCTGGACAT GACCGTCACG
GCAGAGGGTG TCGAGACGCT GGAGCAGGCC GAGTTCCTGC AAGCCGCGGG GTGCGACAAG
TTGCAGGGTT TCCTGTTCGG CCCCCCGATG ACGGCTGCCG CCTACGAGTC ACGGCTGCGC
CGCGACCGTT CCGCGCGGGC CTAG
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| Protein sequence | MDATSAERPD RPEPDVIDQD SPRPLPLADD RYEALVRQMP DALYIVADDI IVFVNEAGVR
LFGAQTARDI VGHELDEFVH DNSMHLARQR REWMVSHGAG LPPVEQTLLR CDGTPVEVEV
LSAPVQLGWR TAIQVVARDI TQRKQAEQAL RESEANYRAL AAETARAKEL LRCEKTVLEL
SSRNVPLPDL LAEVCRLVEA LLDDGAMCSV LLSGDGEHVT QAVAPSLPCT LSQVLVGIAI
GPSVGSCGTA MFLNKTVVVE DIDADPLWDG YRDIVAPLGL RACWSTPIRG DNAQMIGAMG
IYYDSPRAPT RDAMGLLDGI TDIIGVAVQK AHIARDLRES EERYRLAVDN LTEGIVVQAA
DGTILACNPS ARRILRAGSV SPVGTSHLAL MRRSLREDGS EIPVNERPTR VVLATGRPLL
GLTVGLELVD GDVVWVHENV LPIVRPGDDT PSAVLISFND IGPARAAQQQ LTFLAQRDAL
TGLYNRAYFS QRMQAVMEQA ASQANEARQV AVLFLDLDGF KKVNDTAGHE AGDHLLRIVA
QRLSACVRQS DTLARLGGDE FVVLLDNVRS LGEAERLAKR IVHSIAQPFS TSGTEYYLGA
SIGIALYPEH GNDAATLLRC ADAAMYNAKQ NGRNQHRVYT ARLSQRAQRR FQLEYHLRRA
LTAGELSLRF QPIVDATSMD IVGAEVLLRW HSTELGEVSP AEFIPVAEDA GLIGDIGEWV
LAQACRQAAH WRATCMPEFF VAVNLSPRQF GEGLVPTISR CLTEAGLPAS ALEMEITEGL
LMRDTAAVMP MLDALTALGI RISIDDFGTG YSSLSYLQRF PIDNLKVDRS FVSGIPRHRD
SVVISRAVVA MAASLDMTVT AEGVETLEQA EFLQAAGCDK LQGFLFGPPM TAAAYESRLR
RDRSARA
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