| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0488 |
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| Symbol | |
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| ID | 8018114 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012856 |
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| Strand | - |
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| Start bp | 513184 |
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| End bp | 515787 |
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| Gene Length | 2604 bp |
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| Protein Length | 867 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644829268 |
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| Product | DNA ligase D |
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| Protein accession | YP_002980466 |
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| Protein GI | 241662106 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.160576 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.373477 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGCGCC ATCTCGCCGA CTACCGCCGC AAGCGCGATT TCACGCAGAC CCAGGAACCC
GCCGGCGCGC GCCGCAAAGC CGACGAACAG CGTGACCATG GCGCCCTGCA CTTCGTGATC
CAGAAGCACG ACGCAACGCG ACTGCACTAC GACTTCCGGC TGGAACTCGA CGGCACGCTC
AAGAGCTGGG CCGTCCCCAA GGGCCCGAGC CTGGACCCCG CCGACAAGCG CCTCGCGGTA
CACGTTGAAG ACCATCCGCT GGACTACGCC GATTTCGAAG GCCATATCCC CGAAGGCCAA
TACGGCGGCG GCGACGTGAT TGTGTGGGAC CGCGGGACAT GGCGCCCGCA TGGCGATCCG
CGCAAGGCCT ACCGCGACGG CAAGCTCAAA TTCGACCTCC ATGGCGAAAA GCTGCATGGT
GCATGGGCGC TGGTGCGCAC GCACTTGCAC GGCACGGGCA GACATCCGAA AGAACAGTGG
TTGCTGATCA AGGAACGGGA CGACCAGGTG CGCGCATCCA GCGACTACGA CGTGACGGAG
GCACTGCCCG CGAGCGTGAT TACCGGCGAG AACATCGGCT CCAAACCCCG TGGCAAAGCA
AAGGCCAAGT CCAGTGACGG CAAGACTGGG CGCTCCGAAC CGGAGCAAGT CCAACCGCCC
GCCGGTGCCG TGCCCGCCCC GTTGCCCAGA ACGCTGGAGC CCCAACTCGC CACGCTCGTC
GATGGTCCGC CCGCCCAAGG CGAATGGGAC TACGAAGTCA AGTTCGACGG CTACCGCATC
CTTGCACGCA TTGACGGCGA CACGGTGCGC CTGTTCAGCC GCAACGGCCG CGACTGGACG
GGCAAACTGC CCCGTCAGGC GCGCACACTG CAGGCGCTGG GCCTGCGCGA GGCGTGGCTC
GACGGCGAAG TCGTGGTGAT GGGCGAGCGC GGCGTGCCCG ACTTCCAGGC GCTGCAGAAC
GCCTTTGAAA CCGCGCATGC CGAGCACATT GCCTACTACC TGTTCGACAT TCCGTTCTGC
AACGGTATGG ACTTGCGCGG CGTGCCGTTG CGGGAGCGGC GAGCGCTGCT TGAGCGCATT
CTCAATGCCG CCCCGGGTGA CCTGGACCGC GAAGCGGTGC TCTTCTCAGG GACATTTCAC
GCGGCACCCG AAGACTTGCT GTCTTCCGCG TGCAGCATGT CGCTCGAAGG GGTGATCGGC
AAGCGCGCCG ATGCGGCGTA CCGGGCCGGC CGCAGCCCTG CCTGGATCAA GCTCAAATGC
GGGCAGCGGC AGGAATTCGT GATCGGCGGC TACAGCGCGC CCAAGGGCAG CCGCAGCGGC
TTCGGCGCGC TGCTGCTCGG CGTCTATGAC GACGCGGGCA AGCTGCGCTA TGCGGGCCGT
GTCGGCACGG GCTTCAACGA GACGAGTCTG CACGCTTTGC ACCACGAGCT GACGGGTCTG
ACCGTCGACA CGCCGCCCTT CGCCAATCCG CCCACCGGCA GCGATGCGCG CGACGTGCAA
TGGGTGAAGC CCGAACGCGT GGCGGAAATC GCCTTCGCCG AATGGACGCG CGAAGGCATC
GTGCGGCAGG CGGTGTTTCA AGGTTTGCGC GACGACAAAC CCGCGCGCAA CATCGTGCGT
GAACAAGCCA AGCCGCCCAG TGCCGCCGCC CGCAAGGAGA CCCGCGCCGT GCATGCTACC
GAACGCAAGG TGCGCCCCGG TGCCGAACGC ATCGCCGATG TGGACGTCAC GCATCCGGAT
CGCGTGATCG AGAAAGCCAG TGGCACCACC AAGGCGGACC TGGCGCGCTA TTACGCGGGC
GTGGCCGAGT GGATGCTGCC GCATCTGCAC AACCGGCCGA CATCGCTGGT GCGCGCGCCC
GACGGCATCG ACGGCGAGCG CTTCTTCCAG AAGCATTCCG CCGCGCTCAA GCTGCAGGGC
ATCACGCAGC TGGACCCATC GCTCGACCCG GGGCATCCGT CGCTGCTTGC GATCAACTCG
GCCGAGGCCC TGGTCGGGGC GGTGCAGATG GGCACGGTGG AATTCCACAC GTGGAATGCC
CTTGCCGACC GCATCGAACA GCCCGACCGC ATCGTCTTCG ATATCGACCC AGACCCAGCG
CTGCCCTTCG CGCGCGTGAT CGAGGCCACG CAGCTCATGC TGGCCATGCT CGATGAACTG
GGCCTGAAGG CCTTCCTGAA AACCAGCGGC GGCCACGGCA TGCATGTGGT CGTGCCGCTC
ACGCGCCGTG AGGCTTCCGG CTGGGACACG CTCAAGGCCT TCGCGCAGGC CGTGGTGCAA
CATATGGCCG CGACGTTCCC CGACCGCTTT GTTGCCAAGA TGGGTCCGCA GAACCGCGTG
GGGAAAATCT TCATCGACTA TCTGCGCAAC AACCGCGGGG CGAGCACCGT GGCCGCCTAT
TCGGTGCGCG CGCGGACGGG GTTGCCGGTG TCGGTGCCGA TCCGCCATGA CGAACTCGAA
GGGCTGCAGT CGTCTGCGCA GTGGACGTTG CGTACGCTGC CGGATCGGCT CGCCAAGCTC
AAGGGCGACC CATGGGCCGA CTATGCTGGC ACGCGCCAAT CGGTGACAGC CGACATGCGA
AAGCGCGTCG GTGCCAATGA CTGA
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| Protein sequence | MPRHLADYRR KRDFTQTQEP AGARRKADEQ RDHGALHFVI QKHDATRLHY DFRLELDGTL
KSWAVPKGPS LDPADKRLAV HVEDHPLDYA DFEGHIPEGQ YGGGDVIVWD RGTWRPHGDP
RKAYRDGKLK FDLHGEKLHG AWALVRTHLH GTGRHPKEQW LLIKERDDQV RASSDYDVTE
ALPASVITGE NIGSKPRGKA KAKSSDGKTG RSEPEQVQPP AGAVPAPLPR TLEPQLATLV
DGPPAQGEWD YEVKFDGYRI LARIDGDTVR LFSRNGRDWT GKLPRQARTL QALGLREAWL
DGEVVVMGER GVPDFQALQN AFETAHAEHI AYYLFDIPFC NGMDLRGVPL RERRALLERI
LNAAPGDLDR EAVLFSGTFH AAPEDLLSSA CSMSLEGVIG KRADAAYRAG RSPAWIKLKC
GQRQEFVIGG YSAPKGSRSG FGALLLGVYD DAGKLRYAGR VGTGFNETSL HALHHELTGL
TVDTPPFANP PTGSDARDVQ WVKPERVAEI AFAEWTREGI VRQAVFQGLR DDKPARNIVR
EQAKPPSAAA RKETRAVHAT ERKVRPGAER IADVDVTHPD RVIEKASGTT KADLARYYAG
VAEWMLPHLH NRPTSLVRAP DGIDGERFFQ KHSAALKLQG ITQLDPSLDP GHPSLLAINS
AEALVGAVQM GTVEFHTWNA LADRIEQPDR IVFDIDPDPA LPFARVIEAT QLMLAMLDEL
GLKAFLKTSG GHGMHVVVPL TRREASGWDT LKAFAQAVVQ HMAATFPDRF VAKMGPQNRV
GKIFIDYLRN NRGASTVAAY SVRARTGLPV SVPIRHDELE GLQSSAQWTL RTLPDRLAKL
KGDPWADYAG TRQSVTADMR KRVGAND
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