| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0469 |
|---|
| Symbol | |
|---|
| ID | 8018095 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 494114 |
|---|
| End bp | 495817 |
|---|
| Gene Length | 1704 bp |
|---|
| Protein Length | 567 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644829249 |
|---|
| Product | peptidase M48 Ste24p |
|---|
| Protein accession | YP_002980447 |
|---|
| Protein GI | 241662087 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCTTT CCCTTTTTCG GCCGCGCGTC CGCAAGCTGA CGGCCGCTAT GTTGTTGTCG
ACGTGGCTGG CGCCCCTGCC GTTGCCTGTG CTGGCGCAGG TGGCGGCGTC CGCGCCGGCG
GCCTCGGTTA ACCCGGGGTT GGGTTCCGCC GCGGCTGCCG ATCAGGTGCA GAGCAACCTG
AATCGCAGCG TGCAGATCGG CCGGCAGTCG CCGTATTTGC CGAAGGAGCC GACCGTCATC
GACGCGCCGA CGTACGAGTT GCCCGATATG GGCGATCCGT CGACGGCGTC GCTGTCGCCC
GAGGTGGAGC GCCGCCTGGG CGACCGCGTG ATGCGCCAGA TCCGCCGCGA TCCGGATTTC
GTGCCCGATC CGCTGATCAC GGATTACCTC AACACCATCG GCTACAAGCT GATCGAGGCG
GCGCGCCGTC AGCATGTGGC GGGCAGTACC TCCGCGTCGA GCTTTGAGTT GTTTGCGGTG
CGGGATCCGG GCATCAACGC GTTTGCGTTG CCGGGCGGCT ACATCGGCGT GAACACGGGT
ACGTTGGTCG CGACCGAGAG CGAATCGGAG CTGGCGTCGG TGCTCGGCCA CGAAATCGGC
CACGTGCTGC AGCGGCATAT CGCGCGCGGC ATTGATAAAT CCGGCGAGTC GATGTGGATT
GCGCTGGCGT CGATTCTGCT GGCCGGTCTT GCGGCCACGA AGAGCGGGGA CGCCGCGCAG
GCGCTGGCGA TGGGCGGGCA GGCGGCCGCG GTGTCGAACC AGCTCGCGTT CTCGCGTGGC
GCGGAGCGCG AGGCCGACCG CGTCGGTTTC ACGCTGCTCA CGGGCGCCGG CTACAACCCG
GACGGCATGC CGGACTTTTT CCGTCGTTTG CAGCGCGTCA CGAACATTGC CGATACCGGC
GTAATTCCCG GCTATGCGCG CACCCACCCG CTGACCAGCG AACGCATCGC CGACATGGAA
GACCGCGCGC GTGGCCTGCC GCATCCGCGC CAGCCGCGTC GCCCGGAATT TGGTTTTGCG
AAGGTGCGTG CGCGCGTGCT GCAGGAAACG TCGACGAGCG GCTACATCGA CGTGCGCAAC
GCGATGCGCT CGCAATTGTC GTCGGCGCCG GACGCGCCGG TGGAGAAGCG CGCGGCCCTG
TGGTACGGCG TAGCAGTTGC CAATCAGATG GCGGGGCGGC TGGATGAGGC CGAGCAAGCT
CTGCAGGAAG CGCGACGCCT GTACGGCAAC ATTCCCGGCA TCACGTCGGG CAGCGTCGAG
CTGGACGTCA CGGCCATCGA ACTGGCACGC GCGCGTAACC GTGCGCCCGA GGCGCTGACG
TTGGCACGCG CGGCGCTGGC TGCGTATCCG CTGTCGCGCG CGGTGGGCAT TACCTATGCG
CAAACGCTGC TCTCGGCCGG CCGGACCGAC GACGCGATCC CGTATCTGAA AGACAAGACC
CGTGAAGACA CTGCCCAGCC GATCTGGTGG GACATGCTCG CCCGTGCCTA CGCCGACAAG
GGCAAGCGTG TTGAGCAGCA TCGCGCGCTG GCGGAGAAAT ACGCGCGGGA TGGGGCGTGG
GGATCGGCTG TGGAGCAGCT GAAGCTCGCC CGCGATGCGG GGGATGCGGA TTTCTACACG
CTATCCGAAG TCGACGCGCG CTTGCACCAG ATGGAGCGGC AATACCGCGA AGAGAAGGCG
GAAGACAAGG CGCTGCCGAA GTAG
|
|---|
| Protein sequence | MTLSLFRPRV RKLTAAMLLS TWLAPLPLPV LAQVAASAPA ASVNPGLGSA AAADQVQSNL
NRSVQIGRQS PYLPKEPTVI DAPTYELPDM GDPSTASLSP EVERRLGDRV MRQIRRDPDF
VPDPLITDYL NTIGYKLIEA ARRQHVAGST SASSFELFAV RDPGINAFAL PGGYIGVNTG
TLVATESESE LASVLGHEIG HVLQRHIARG IDKSGESMWI ALASILLAGL AATKSGDAAQ
ALAMGGQAAA VSNQLAFSRG AEREADRVGF TLLTGAGYNP DGMPDFFRRL QRVTNIADTG
VIPGYARTHP LTSERIADME DRARGLPHPR QPRRPEFGFA KVRARVLQET STSGYIDVRN
AMRSQLSSAP DAPVEKRAAL WYGVAVANQM AGRLDEAEQA LQEARRLYGN IPGITSGSVE
LDVTAIELAR ARNRAPEALT LARAALAAYP LSRAVGITYA QTLLSAGRTD DAIPYLKDKT
REDTAQPIWW DMLARAYADK GKRVEQHRAL AEKYARDGAW GSAVEQLKLA RDAGDADFYT
LSEVDARLHQ MERQYREEKA EDKALPK
|
|---|
| |