Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_0373 |
Symbol | |
ID | 8017997 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | + |
Start bp | 391022 |
End bp | 391750 |
Gene Length | 729 bp |
Protein Length | 242 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 644829152 |
Product | polar amino acid ABC transporter, inner membrane subunit |
Protein accession | YP_002980351 |
Protein GI | 241661991 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0765] ABC-type amino acid transport system, permease component |
TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.25147 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATTACC ACTGGAACTG GGGCGTCTTC TTTACGGAAG CCGCCCAGAA TCAGACCTAT CTGGACTGGC TGCTGGCGGG GTTGAAGACC ACCGTCGTGC TCGGCCTGTC TTCCTGGATC ATCGCGCTCG TCATCGGCTC CGTGCTGGGC GTGCTGCGTA CGGTGCCGAA CAAGTGGCTG TCGGGCCTTG CCGCAGCCTA CGTGGAAGTG TTCCGCAACA TTCCGCTGAT CGTGCAGCTC TTCATCTGGT ACTTCGTCAT GCCAGAACTT GTGCCGGGCG GCGACTACAT CAAGCAGATG AACCCCGCCA CGGCGATGTT CCTGTGCGCG ATGCTGTGCC TCGGTACCTT TACCGCGGCA CGTGTGTGCG AACAGGTGCG CTCGGGTATC AATTCGCTGC CGCGCGGTCA ACGCAACGCA GGCCTGGCGA TGGGCTTCAC GCTTGCGCAG ACGTATCGCT ACGTGATGTT GCCGATGTCG TTCCGCATCA TCGTGCCGCC GCTTACGTCG GAGTTTCTGA ATATCTTCAA GAACTCCGCC GTGGCCTCGA CGATCGGCTT GCTTGAGCTT GCCGCACAAG GCCGCCAGTT GGTCGACTAC ACCGCACAGC CGTACGAATC GTTCATCGCC GTGACGCTGA TGTACATGCT GATCAACCTG ACCGTGATGG GCCTCATGCG CTGGGTGGAA GCACGTTCCC GGCTGCCTGG CTTCATCGGT GGCAAGTAA
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Protein sequence | MNYHWNWGVF FTEAAQNQTY LDWLLAGLKT TVVLGLSSWI IALVIGSVLG VLRTVPNKWL SGLAAAYVEV FRNIPLIVQL FIWYFVMPEL VPGGDYIKQM NPATAMFLCA MLCLGTFTAA RVCEQVRSGI NSLPRGQRNA GLAMGFTLAQ TYRYVMLPMS FRIIVPPLTS EFLNIFKNSA VASTIGLLEL AAQGRQLVDY TAQPYESFIA VTLMYMLINL TVMGLMRWVE ARSRLPGFIG GK
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