Gene Rpic12D_0290 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_0290 
Symbol 
ID8017914 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp300288 
End bp301799 
Gene Length1512 bp 
Protein Length503 aa 
Translation table11 
GC content60% 
IMG OID644829070 
ProductRNA polymerase factor sigma-54 
Protein accessionYP_002980269 
Protein GI241661909 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACAGT CGCTCCAGCT CCGTCTCTCT CAGCATCTCG CGCTCACGCC GCAGTTGCAG 
CAATCGATCA GATTGCTGCA GTTGTCGACC ATCGAACTGC AGCAGGAAGT TGAACAGGCC
CTGACCGAAA ACCCGCTGCT GGAGCGGGAA AACGAGTGGC TCGACACCTC CGCCCGCATT
GGCGCAGACG GCTCCGTCAA CGCGCTGCAA AGCAACAGCG CCACGCCCCT TCCCACTGAA
TCACCTCCGC CCGCACCCAA CGGCGGCGAC AGCAGCAACA GCTCGGACAG CAGCTACGAA
AACGGCCACG ACAACGGTGC CGATTTCGAC AGCGATTACG GCTCCGACCG CTCCGACTGG
AGCCTTGACG ACTTCGCCCG CAAACCGCAA TCCGATGAAG ACGATCGTGC TCCGCTGCAG
TTGCGCGAAG CCGAACAAAG CCTGCGCGAA TTCCTCATGG AACAGCTCGC GCCGCTCAAG
CTCTCGATGC GCGACAAGGG CCTCGTCATC TTCCTGATCG AGTCGCTCGA CGATGAAGGC
TATCTGTCGG GCACGCTCGA CGAAATCCTC GCAGACCTGC CGACCGAACT CGAAGTCGAA
CTGGATGAAC TGCAAGCCGC GCTGCGCATG CTGCAGAGCT TTGATCCACC GGGCATTGGC
GCGCGCTCGG CAGCCGAATG CCTCTCGTTG CAACTGCATC GGCTCGACTC GCCCGCGAAG
GCGCTGGCGC TCGTCATCGT CAATCAGCAT CTCGAACTGC TGGCCGCGCG CGACTACACG
CGCCTGAAGA AGGCCCTGTC CGTCGACGAG CCCGCGTTGA AGGCAGCGCA TGAGCTGATT
CGCTCACTGA CACCATTTCC GGGTCATGCT TTCGGCCGTG CTGAAGCAGA TTTCGTGGTG
CCCGACGTGA TCGTGCGAAA AACGAGCGCA GGCTGGATGG CGCAACTGAA CCCCGACGTC
ATGCCGCGCT TGCGCATCAA CGACATGTAC GCGCAGATTC TGCGCAGCAG CCGTGGCGAG
TCGGGCGCCG CCAATCTGCA GCAGAAGCTG CAGGAAGCAC GTTGGCTGAT CAAGAACATT
CAACAGCGCT TCGATACGAT CCTGCGTGTC TCGCAAGCCA TTGTCGAGCG TCAAAAGAGC
TTCTTCACGC ACGGCGAAAT CGCCATGCGC CCCTTGGTTT TGCGGGAAAT AGCCGATACA
CTGGGTCTAC ACGAGTCCAC GATCTCCCGT GTGACAACCA ACAAATACAT GGCGACCCCG
ATGGGGACGT TCGAGCTGAA GTACTTCTTC GGCAGCCATG TATCGACGGA AACCGGCGGG
GCGGCGTCAT CCACCGCGAT ACGCGCGCTC ATCAAGCAAC TTGTAGGAGC CGAAGACCCG
AAGAATCCTC TGTCCGATAG CAGAATTGCC GAACTGTTAG GTGAACAAGG ATTCGTGGTG
GCCCGTCGGA CGGTGGCCAA ATACCGCGAA GCCCTCAAGA TCCCTGCAGT GAATTTGCGC
AAGTCTTTAT AG
 
Protein sequence
MKQSLQLRLS QHLALTPQLQ QSIRLLQLST IELQQEVEQA LTENPLLERE NEWLDTSARI 
GADGSVNALQ SNSATPLPTE SPPPAPNGGD SSNSSDSSYE NGHDNGADFD SDYGSDRSDW
SLDDFARKPQ SDEDDRAPLQ LREAEQSLRE FLMEQLAPLK LSMRDKGLVI FLIESLDDEG
YLSGTLDEIL ADLPTELEVE LDELQAALRM LQSFDPPGIG ARSAAECLSL QLHRLDSPAK
ALALVIVNQH LELLAARDYT RLKKALSVDE PALKAAHELI RSLTPFPGHA FGRAEADFVV
PDVIVRKTSA GWMAQLNPDV MPRLRINDMY AQILRSSRGE SGAANLQQKL QEARWLIKNI
QQRFDTILRV SQAIVERQKS FFTHGEIAMR PLVLREIADT LGLHESTISR VTTNKYMATP
MGTFELKYFF GSHVSTETGG AASSTAIRAL IKQLVGAEDP KNPLSDSRIA ELLGEQGFVV
ARRTVAKYRE ALKIPAVNLR KSL