Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_0290 |
Symbol | |
ID | 8017914 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012856 |
Strand | - |
Start bp | 300288 |
End bp | 301799 |
Gene Length | 1512 bp |
Protein Length | 503 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 644829070 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_002980269 |
Protein GI | 241661909 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACAGT CGCTCCAGCT CCGTCTCTCT CAGCATCTCG CGCTCACGCC GCAGTTGCAG CAATCGATCA GATTGCTGCA GTTGTCGACC ATCGAACTGC AGCAGGAAGT TGAACAGGCC CTGACCGAAA ACCCGCTGCT GGAGCGGGAA AACGAGTGGC TCGACACCTC CGCCCGCATT GGCGCAGACG GCTCCGTCAA CGCGCTGCAA AGCAACAGCG CCACGCCCCT TCCCACTGAA TCACCTCCGC CCGCACCCAA CGGCGGCGAC AGCAGCAACA GCTCGGACAG CAGCTACGAA AACGGCCACG ACAACGGTGC CGATTTCGAC AGCGATTACG GCTCCGACCG CTCCGACTGG AGCCTTGACG ACTTCGCCCG CAAACCGCAA TCCGATGAAG ACGATCGTGC TCCGCTGCAG TTGCGCGAAG CCGAACAAAG CCTGCGCGAA TTCCTCATGG AACAGCTCGC GCCGCTCAAG CTCTCGATGC GCGACAAGGG CCTCGTCATC TTCCTGATCG AGTCGCTCGA CGATGAAGGC TATCTGTCGG GCACGCTCGA CGAAATCCTC GCAGACCTGC CGACCGAACT CGAAGTCGAA CTGGATGAAC TGCAAGCCGC GCTGCGCATG CTGCAGAGCT TTGATCCACC GGGCATTGGC GCGCGCTCGG CAGCCGAATG CCTCTCGTTG CAACTGCATC GGCTCGACTC GCCCGCGAAG GCGCTGGCGC TCGTCATCGT CAATCAGCAT CTCGAACTGC TGGCCGCGCG CGACTACACG CGCCTGAAGA AGGCCCTGTC CGTCGACGAG CCCGCGTTGA AGGCAGCGCA TGAGCTGATT CGCTCACTGA CACCATTTCC GGGTCATGCT TTCGGCCGTG CTGAAGCAGA TTTCGTGGTG CCCGACGTGA TCGTGCGAAA AACGAGCGCA GGCTGGATGG CGCAACTGAA CCCCGACGTC ATGCCGCGCT TGCGCATCAA CGACATGTAC GCGCAGATTC TGCGCAGCAG CCGTGGCGAG TCGGGCGCCG CCAATCTGCA GCAGAAGCTG CAGGAAGCAC GTTGGCTGAT CAAGAACATT CAACAGCGCT TCGATACGAT CCTGCGTGTC TCGCAAGCCA TTGTCGAGCG TCAAAAGAGC TTCTTCACGC ACGGCGAAAT CGCCATGCGC CCCTTGGTTT TGCGGGAAAT AGCCGATACA CTGGGTCTAC ACGAGTCCAC GATCTCCCGT GTGACAACCA ACAAATACAT GGCGACCCCG ATGGGGACGT TCGAGCTGAA GTACTTCTTC GGCAGCCATG TATCGACGGA AACCGGCGGG GCGGCGTCAT CCACCGCGAT ACGCGCGCTC ATCAAGCAAC TTGTAGGAGC CGAAGACCCG AAGAATCCTC TGTCCGATAG CAGAATTGCC GAACTGTTAG GTGAACAAGG ATTCGTGGTG GCCCGTCGGA CGGTGGCCAA ATACCGCGAA GCCCTCAAGA TCCCTGCAGT GAATTTGCGC AAGTCTTTAT AG
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Protein sequence | MKQSLQLRLS QHLALTPQLQ QSIRLLQLST IELQQEVEQA LTENPLLERE NEWLDTSARI GADGSVNALQ SNSATPLPTE SPPPAPNGGD SSNSSDSSYE NGHDNGADFD SDYGSDRSDW SLDDFARKPQ SDEDDRAPLQ LREAEQSLRE FLMEQLAPLK LSMRDKGLVI FLIESLDDEG YLSGTLDEIL ADLPTELEVE LDELQAALRM LQSFDPPGIG ARSAAECLSL QLHRLDSPAK ALALVIVNQH LELLAARDYT RLKKALSVDE PALKAAHELI RSLTPFPGHA FGRAEADFVV PDVIVRKTSA GWMAQLNPDV MPRLRINDMY AQILRSSRGE SGAANLQQKL QEARWLIKNI QQRFDTILRV SQAIVERQKS FFTHGEIAMR PLVLREIADT LGLHESTISR VTTNKYMATP MGTFELKYFF GSHVSTETGG AASSTAIRAL IKQLVGAEDP KNPLSDSRIA ELLGEQGFVV ARRTVAKYRE ALKIPAVNLR KSL
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