| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0288 |
|---|
| Symbol | |
|---|
| ID | 8017912 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | - |
|---|
| Start bp | 299082 |
|---|
| End bp | 299537 |
|---|
| Gene Length | 456 bp |
|---|
| Protein Length | 151 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644829068 |
|---|
| Product | PTS IIA-like nitrogen-regulatory protein PtsN |
|---|
| Protein accession | YP_002980267 |
|---|
| Protein GI | 241661907 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1762] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) |
|---|
| TIGRFAM ID | [TIGR01419] PTS IIA-like nitrogen-regulatory protein PtsN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.958173 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCGCT TGGCCAAACT GCTGCCGCCC GGGAACATTG CCCTCGACGT CAGCGTAACC
AGCAAGAAGC GGGTATTTGA ACAGGCCGGC CTGCTGTTCG AGAACAACCA CGGCGTGACG
CGCGCAGTTG TCACCGACAA CCTGTTTGCG CGCGAGTCGC TAGGCTCCAC GGGCCTGGGC
GCCGGCGTGG CGATCCCGCA CGGCCGCATC AAAGGGCTCA AACAGCCGCT GGCAGCTTTC
ATGCGCCTGT CCGAACCGGT GCCCTTCGAG TCGCCTGACG GCAAACCTGT CTCACTACTG
ATTTTCCTAC TGGTGCCGGA ACAGGCGACC CAGCAGCATC TGGAAATCCT GTCTGAAATC
GCCCAGCTGC TGTCCGACCG CGACATGCGC GAAGGCCTCG CCACCCTGCC GTCGCCCGAG
GCGATTCACC AGCTACTGAC CGACTGGCGG CCCTGA
|
|---|
| Protein sequence | MNRLAKLLPP GNIALDVSVT SKKRVFEQAG LLFENNHGVT RAVVTDNLFA RESLGSTGLG
AGVAIPHGRI KGLKQPLAAF MRLSEPVPFE SPDGKPVSLL IFLLVPEQAT QQHLEILSEI
AQLLSDRDMR EGLATLPSPE AIHQLLTDWR P
|
|---|
| |