Gene Rpic12D_0233 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_0233 
Symbol 
ID8017856 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp245550 
End bp246020 
Gene Length471 bp 
Protein Length156 aa 
Translation table11 
GC content64% 
IMG OID644829013 
ProductRNA methyltransferase, TrmH family, group 2 
Protein accessionYP_002980213 
Protein GI241661853 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0219] Predicted rRNA methylase (SpoU class) 
TIGRFAM ID[TIGR00185] rRNA methylase, putative, group 2 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0188294 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCAACG TCGTCCTTGT CGAACCCGAA ATTCCGCCCA ATACGGGCAA TGTGATCCGC 
CTGTGCGCCA ATACGGGCGC GCAACTGCAT CTGATCGAAC CGTTGGGTTT TCCGCTCGAA
GATGCCCGCA TGCGCCGCGC CGGCCTCGAT TACCACGAGT ACGCGACGAT GCGCGTGCAC
GCCGATTGGG ACGCCTTCCT GCGCGATGCC CAGCCCGATC CCGCGCGCAT GTTTGCGCTC
ACCACGCGCG GCTCGACGCC GTTTGCGAGC ATGGCGTTCC AGCCAGGCGA CTGGTTTGTC
TTCGGGTCGG AAACGCGCGG ATTGTCGGAG GAGCGGCGCG AGTGGTTTCC TGCTACGCAG
CGGATTCGCC TGCCGATGCG GCCGGACAAC CGCAGCCTGA ATCTATCGAA CACCGTGGCG
GTGGTCGTGT TCGAAGCGTG GCGGCAGAAC GGATTCGCGG GTGGCGCCTG A
 
Protein sequence
MFNVVLVEPE IPPNTGNVIR LCANTGAQLH LIEPLGFPLE DARMRRAGLD YHEYATMRVH 
ADWDAFLRDA QPDPARMFAL TTRGSTPFAS MAFQPGDWFV FGSETRGLSE ERREWFPATQ
RIRLPMRPDN RSLNLSNTVA VVVFEAWRQN GFAGGA