Gene Rpic12D_0231 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_0231 
Symbol 
ID8017854 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp243879 
End bp244397 
Gene Length519 bp 
Protein Length172 aa 
Translation table11 
GC content63% 
IMG OID644829011 
Productpreprotein translocase subunit SecB 
Protein accessionYP_002980211 
Protein GI241661851 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1952] Preprotein translocase subunit SecB 
TIGRFAM ID[TIGR00809] protein-export chaperone SecB 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.00543911 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGCGACC AGCAACAACA GCAACCGGGC CAGGATGGCC AGCCGTTCTT CAACATCCAG 
CGCGTCTATC TGAAGGACCT GTCGCTGGAA CAACCGAACT CGCCGCACAT CTTCCTCGAG
CAGGAACAGC CGACTGTCGA AGTGCAGGTG GACGTCGGCG CTTCGCAACT GGCGGAAGGC
GTGTTTGAAG TGACCGTCAT CGGTACGGTG ACGACCAAGG TGCAAGAGAA GGTCGCGTTC
CTGGTGGAAG CCAAGCAAGC GGGCATCTTC GATATCCGCA ACGTGCCGGC CGAGCAGATG
GACCCGCTGC TGGGCATCGC CTGCCCGACC ATCGTGTACC CGTACCTGCG CTCGAACATT
GCCGACACCA TCGGCCGCGC CGGCTTCCAG CCGATCCACC TGGCCGAGAT CAACTTCCAG
GCGCTGTACG AACAACGCCT GGCCGCTGCC ATGGAGCAGC AAGGCCAAGC CGGCGGCGCT
GGTCTGGTGA TGCCGGACGG CTCGAAGGCC ACCCACTAA
 
Protein sequence
MSDQQQQQPG QDGQPFFNIQ RVYLKDLSLE QPNSPHIFLE QEQPTVEVQV DVGASQLAEG 
VFEVTVIGTV TTKVQEKVAF LVEAKQAGIF DIRNVPAEQM DPLLGIACPT IVYPYLRSNI
ADTIGRAGFQ PIHLAEINFQ ALYEQRLAAA MEQQGQAGGA GLVMPDGSKA TH