| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_0202 |
|---|
| Symbol | |
|---|
| ID | 8017825 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 211342 |
|---|
| End bp | 213234 |
|---|
| Gene Length | 1893 bp |
|---|
| Protein Length | 630 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 644828983 |
|---|
| Product | Integrase catalytic region |
|---|
| Protein accession | YP_002980183 |
|---|
| Protein GI | 241661823 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00177404 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCGAC AGAAGCTCGA TCTGACTCCG GACGCATTCG TGGCAAGAGC GGGGACGATT
TATCGACTGG TCGAGGTGCT GGACTTCGAC ACGGTGGTAG GCGTCGACGT CGGTACCGGA
AGAACTCAAG CCCTGCGCAT TGGCGAGTTA AAACCCGTCA GCAGTGCAGA TGACGCGCTC
CAAGTTGTGG CAGCCCGTGA CATAGAGGAG ATTGCCGATG ATGATTGGCG GATCGCCGAA
ACGCGCTATG CGGCCATCAA GCCGTTGCTC GATAAGAGCG TTGGCAGGGC TGGTGTTGCT
GACCGTGCCG CCCAGGTGGG GGTCGATACT GCGACGCTCT ATCGTTGGCT GAAGCGCTAT
CAGAGTTTGG GGGTGGTTTC CGCCTTGATT CCGCGTCAGC GAGGCTGGCG AACTGGGGAG
TCGCGCATTA GCGCCGAGAC AGAAGCTGTG ATCACCGAGG TGCTGCGCAA TAAGTACCTC
ACTGAGCAAC GGTCATCGCC GCAAAAGACC ATACGAGAAG TGCTGCGCCT ATGCGAGGAG
CGCGGCATAC AGCCACCACA CCCTACCACG GTGCGCAACA GGATCGCGGC ACTGAGCGAA
CGCCATACTC TGCATGCTCG CGGCTTCAAG GAAAGAGCCA AGAATAAGTT CCTACCCGCG
GCTGGGCGCT TTCCCAATGC AGATTATCCG CTCGCCGTAG TACAGATCGA CCACACGCCT
GCGGACATCA TATTGGTTGA CGATATCCAT CGCAAACCGA TTGGGCGGCC GTGGATCACG
TTGGCAATTG ACGTGCATAG CCGCATGGTT ACCGGCTACT ACCTTGCTTT CGACCCGCCG
AGTGAAACCT CGGTTGCCAT GTGTGTCGCT CACTCGGTTC TCCCAAAGGA CGAATGGCTA
GCGTTGCATG GCGTCGATGC CCGCTGGGAC GTGTGGGGCA TGATGACAAC GATCCACACT
GACAACGGTC CCGACTTTCG TTCAGACAAC TTTCGTCATG CCTGTCTAAT GCACGGCATA
AATTTGGAGT TTAGGCCCGT AAAGCAGCCC CGCTATGGTG GCCATATTGA GCGCCTTCTA
GGCACGTTGC TCAGCGAGAT CCACGACTTG CCGGGTACGA CCTTTTCATC CGTCAAGGTG
CGTGAGGGTT ATGACTCAGA TAAGCACGCT GCCTTAACCA AGTCCGAGTT TGAGACCTGG
CTCGTTACCT TGATCTGCAA GCTATACCAC CAGCGCTTAC ACAAGGGGAT AGGCATGTCC
CCAGCTCGAA AGTGGGAGAT TGGTATGTTC GGCAATGCGG AAATCGTAGG GCGCGGCTTG
CCGCCGAGGC CAACTGACCG CTTGTCGCTG CTATTGGATT TCATGCCATC GTACCGACGC
ACGGTACAGA CCTACGGCGT CGACATCGAA GGATTGCGTT ACTACGCTGA CGTTCTACGC
TCGTGGATCA ATGCGACAGA CCCAGATACA CCGAGCGCCA AGCGGAAATT TGTGTTCCGG
CGTGATCCGC GGGACATCAG TGTGGTCTGG TTCCGCGACC CGGATTTGGG GCAGTATTTC
CGGATTCCTT TCGCCAACCA GGCGCTGCCG CCAATGAGTG CGTGGGAATA TGAGCAAGCG
AAGGCACGCG CGAAGGCGGA AGGTGTGCAA TCGGTAGACG AGCCGCAGAT TTTGCGCGCA
CTTACGGAGA TGCGCAGTCA GGTTGACGAG GCTAAGGAGA AAACCAGGAG AGCACGGCGT
CAGAGCCAGC GGCGGCGGGA GCACGAGAAA GGCATTTCGC CAGCGGCACC GGTGGCGGCC
AATGCAATTC CCGTGACAAT GATGCGACCT CTCGATCCGG CCGGCGTCGG TTTGGTCGAT
GGCGATATCG ACGCGTTTGA CGACATTGCG TGA
|
|---|
| Protein sequence | MERQKLDLTP DAFVARAGTI YRLVEVLDFD TVVGVDVGTG RTQALRIGEL KPVSSADDAL
QVVAARDIEE IADDDWRIAE TRYAAIKPLL DKSVGRAGVA DRAAQVGVDT ATLYRWLKRY
QSLGVVSALI PRQRGWRTGE SRISAETEAV ITEVLRNKYL TEQRSSPQKT IREVLRLCEE
RGIQPPHPTT VRNRIAALSE RHTLHARGFK ERAKNKFLPA AGRFPNADYP LAVVQIDHTP
ADIILVDDIH RKPIGRPWIT LAIDVHSRMV TGYYLAFDPP SETSVAMCVA HSVLPKDEWL
ALHGVDARWD VWGMMTTIHT DNGPDFRSDN FRHACLMHGI NLEFRPVKQP RYGGHIERLL
GTLLSEIHDL PGTTFSSVKV REGYDSDKHA ALTKSEFETW LVTLICKLYH QRLHKGIGMS
PARKWEIGMF GNAEIVGRGL PPRPTDRLSL LLDFMPSYRR TVQTYGVDIE GLRYYADVLR
SWINATDPDT PSAKRKFVFR RDPRDISVVW FRDPDLGQYF RIPFANQALP PMSAWEYEQA
KARAKAEGVQ SVDEPQILRA LTEMRSQVDE AKEKTRRARR QSQRRREHEK GISPAAPVAA
NAIPVTMMRP LDPAGVGLVD GDIDAFDDIA
|
|---|
| |