Gene Rpic12D_0165 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_0165 
Symbol 
ID8017788 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp173674 
End bp174837 
Gene Length1164 bp 
Protein Length387 aa 
Translation table11 
GC content66% 
IMG OID644828947 
ProductExtracellular ligand-binding receptor 
Protein accessionYP_002980147 
Protein GI241661787 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGCGAC CGAAGTGGCG GCACGCAGGC GTACTGGCTG GTCTGGCTTT GCTGTCTTCC 
GCCGCACTGG CGGACATCCG CGTCGGGGTC ACGGTGTCGG CCACCGGGCC GCAGGCCTCG
CTGGGGCAGC CCGAGAAGAA CGCAACCACG CTGTGGCCAA GCGAGATTGG CGGCGAAAAG
GTCGACGTGA TCGTGCTTGA CGATGCGTCG GACACCACGC GCGCCGTTAC CAACACGCGC
AAGCTGATGA GCGAGTCGAA CGTTGACGTC ATCGTTGGCT CTTCCACGAC GCCGAATACG
CTGGCGATGA TCGACGCGGC GGCCGAGGGC AAGACGCCCG TGATTTCGCT GGCCTCATCC
GCCCGGTTGA TCGAGCCGAT GGATGCCAAG CGGCGCTGGA TCTTCAAGAC GCCGCATTCG
GACTCGCACA TGGCGTCGCT GATTGCTGAG CACGCCGCAG CGCACGGCTT GAAGACCATT
GCTTACATCG GCTTTGCAAA TGCACTGGGC GAGGCCTTCC TGACGGAGGT GCAGCGCTTT
GCCGATCTCA AGCACATCCG CGTCACCGAT ACCGAGCGTT TTTCGCCCAC GGACAACAGC
GTGACGGCGC AAGTCCTGCA TCTGCTGGCC AACAAGCCCG ACGCGGTGGT GATTGGCGGC
TCCGGCACGC CGGCTGCGCT GCCGGCTCGC GCGCTGGCGG AGCGGGGCTA CACCGGCAAG
ATCTACTTCA ACCACGGCGT TTCCAACAAC GATTTCGTCC GGCTATGCGG CAAGGACTGC
GAAGGCGCCT ACGTGCCGAC CGGCCCCGTG ATGGTCGCCG CCGAACTGTC TGATACCCAC
CCAGCCAAGA AGCAGGCGCT GGATTTTGCG CGCCGCTACG AGGCCGCCTT CGGCAAGGGC
AGCGTGTCGA TCTTCGCGGC CTACACCGGC GACATCGGCT TGCTGTTGCA GCGTGCGGTG
CCGGTGGCGC TCAAGCGCGC CAAGCCTGGC ACGCCGGCCT TTCGCGAGGC GCTGCGCGAT
GCACTGGAGC AGGTGCGCGA TCTGCCTACC AGCACCGGCG TGGTGAACAT GAGCCCACAA
GACCACGTTG GCCTGGACCA GCGTGCCCGC GTCATGGCGC AGATCCGCCG TGGCCAATGG
CACCTGGCCG ATACCGCGAA GTGA
 
Protein sequence
MQRPKWRHAG VLAGLALLSS AALADIRVGV TVSATGPQAS LGQPEKNATT LWPSEIGGEK 
VDVIVLDDAS DTTRAVTNTR KLMSESNVDV IVGSSTTPNT LAMIDAAAEG KTPVISLASS
ARLIEPMDAK RRWIFKTPHS DSHMASLIAE HAAAHGLKTI AYIGFANALG EAFLTEVQRF
ADLKHIRVTD TERFSPTDNS VTAQVLHLLA NKPDAVVIGG SGTPAALPAR ALAERGYTGK
IYFNHGVSNN DFVRLCGKDC EGAYVPTGPV MVAAELSDTH PAKKQALDFA RRYEAAFGKG
SVSIFAAYTG DIGLLLQRAV PVALKRAKPG TPAFREALRD ALEQVRDLPT STGVVNMSPQ
DHVGLDQRAR VMAQIRRGQW HLADTAK