Gene Rpic12D_0139 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_0139 
Symbol 
ID8017762 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp149894 
End bp150973 
Gene Length1080 bp 
Protein Length359 aa 
Translation table11 
GC content64% 
IMG OID644828921 
Productbeta-lactamase domain protein 
Protein accessionYP_002980121 
Protein GI241661761 
COG category[R] General function prediction only 
COG ID[COG0491] Zn-dependent hydrolases, including glyoxylases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.486193 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGCGC TCGAACACCA ACTCGACTAT CCCTTTGGCG ACACGCTTCC CGAGGGCGGC 
ACGCGGTTTG AAGTCGCCCC TGGCGTCTAC TGGCTGCGCA TGCCGCTGCC GTTTGCGCTC
GATCACATCA ACCTCTGGCT GCTGCGCGAT CGCCAGGACG GGCAGGACGG CTGGACGATC
ATCGATTGCG GCATCAACCA CGAAGCGATT CGCGGGTACT GGGAAACGAT CTTCGCGAAC
CACCTCGACG GCCTGCCGGT GCTGCGCGTG CTGGTCACGC ACTGTCATCC GGACCACGTC
GGCCTGTCGA ACTGGCTGTG CGAAGGCGGC GACCAAAAAC GCTGGAACGT GCGCCTGTGG
ATGAGCCTGG GCGACTACGC CTTCGCGCGC ATGCTGGTGG GCGGCACGGG TGCGTCGAAT
GCCGGCGGCG AATTTGCCGC GCGCCATTTC GAGCGCCACG GCTTGACCGA CCCGACTTCC
ATCGAAGGCA TCCGCAATCG CAAGGATTAC TACAGCACGC TCGTGCCCGG CGTGCCGAGC
CAGTACCGCC GCCTGATGGA CGGCAATGTC GTCACCATCG GCGAGCACAA GTGGCGTGTC
ATCACCGGTT TCGGCCACGC GCCCGAGCAC GTCGCGCTCT ACAGTGAAGA TGCCAATGTG
CTGATTTCCG GCGACATGGT CCTGCCGCGC ATTTCCACCA ACGTGAGCGT GTTCGATCTG
GAGCCTGAAG CGGATTCGCT CACGCTGTAT CTGGATTCGC TCGGCAAATA CGAGCCGCTG
CCCGCGGATG TGCTGATTCT GCCGTCGCAC GGGCGGCCGT TCCGGGGGCT GCATACGCGC
ATTCGGCAAC TGCGCGATCA CCATGCGGAT CGCCTGGCCG AAACGTTGGC CGCGTGCAAG
GCCGCGCCGC AATCGGCACG CGACATCGTC AACGTCATCT TCAAGCGTCA GTTCGATGTG
CACCAGATGA CCTTCGCGAT GGGCGAGGCG CTTGCTCACC TGCATGCGCT GTGGCATCAA
GGCGAACTGG TGCGCGAAAC CGGCGCGGAC GGTATCGTTC GATTCCAGGC CGCTGCATAA
 
Protein sequence
MNALEHQLDY PFGDTLPEGG TRFEVAPGVY WLRMPLPFAL DHINLWLLRD RQDGQDGWTI 
IDCGINHEAI RGYWETIFAN HLDGLPVLRV LVTHCHPDHV GLSNWLCEGG DQKRWNVRLW
MSLGDYAFAR MLVGGTGASN AGGEFAARHF ERHGLTDPTS IEGIRNRKDY YSTLVPGVPS
QYRRLMDGNV VTIGEHKWRV ITGFGHAPEH VALYSEDANV LISGDMVLPR ISTNVSVFDL
EPEADSLTLY LDSLGKYEPL PADVLILPSH GRPFRGLHTR IRQLRDHHAD RLAETLAACK
AAPQSARDIV NVIFKRQFDV HQMTFAMGEA LAHLHALWHQ GELVRETGAD GIVRFQAAA