Gene Rpic12D_0081 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_0081 
Symbol 
ID8017704 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp86180 
End bp87388 
Gene Length1209 bp 
Protein Length402 aa 
Translation table11 
GC content67% 
IMG OID644828864 
Productputative transcriptional regulator, GntR family 
Protein accessionYP_002980064 
Protein GI241661704 
COG category[E] Amino acid transport and metabolism
[K] Transcription 
COG ID[COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.48267 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAATTCC TGCAATCGCT GCTGGCACCC CGCCTGCAAA ACGTTGAAAC CTCCGCCATC 
CGCGAGCTGT TCAAGGTGCT CGGCAAGCCG GGCCTGATCT CGTTTGCGGG CGGCTTTCCT
GACTCGGCCC TGTTTGACGT GGAAGGCCTG AAGGCCGCGG CCGACAGCGC GCTCACCACC
GACGCCGCCC GCGCGCTGCA ATACGGCGCC ACCGAAGGCT TCGAGCCGCT GCGCGAGGCC
ATCGTCACGC TGATGAAGGC GCGCGGCGCT AACGTCGCCA ACACCGACAT CCTCGTCACC
ACCGGGTCGC AGCAAGGGCT GGATCTGCTG GGCAAGGTGC TGATCGGTGA AGGCGACACA
GTGCTGACCG AAGCGCCCAC CTTCCTCGCC GCCATCCAGG CGTTCAAGCT GTACGGCGCC
AAGGTGGCCG GCGTACCGAC CGACGGCGAC GGCCTGGATG TCGACGCGCT GGAAAAGGTG
CTCTCCACCG CGCGCCCCAA ATTCCTCTAC GTGATTCCCA ACTTCGGCAA CCCGAGCGGC
GCGCTGATGA GCCTGGAGCG TCGCAAGCAC CTGCTGGATG TGGCCGTGCG CCACAACCTG
CTGATCGTGG AAGACGACCC GTACGGCGAT CTGTATTTCG ACGCGCCCCC GCCGCCGTCG
CTGTACGCGC TGTCGCAGCA GACCGACGGC GCGCAGGGGC GTGTGATCTA CCTGGGCAGC
TTGTCGAAGG TGGTGGCGCC GGGCCTGCGC GTGGGCTGGA TGATCGCCTC GCAGCCGGTG
CTGGGCAACG CGGTGATGGT CAAGCAGTTT GCCGATGCGC ACACCTCCAC GTTTGCGCAG
GCCACGGCCG CCGCGTACCT GCGCAGCAAT CGCCTGGAGA CTGTGCTGCC ACGCACGCGT
GCGGCCTATG CCGAACGCGC CCACGCCATG GCCAACGGCC TGCGTGCGCT GCTGCCCGAC
ACCGAACTGA CCTTCAACCG CCCGCGCGGC GGCATGTTCC TGTGGTGCAC CTTGCCGGGC
CGCAATGCCG GCGATGTGGC CAAGGTGGCC ATCGAGCGCG GTGTGGCGTT CGTGCCGGGC
GCGGCGTTCT ACCCGGTCGA TCCGGATCGC TCGACGCTGC GTCTGTCGTA CGCCACCTCG
TCGCTGGCGC AGGTGGAAGA GGGTGTGCGC AAGCTTGCGC ATGCCATCGG CGAGTTCAAG
CTGGGCTGA
 
Protein sequence
MEFLQSLLAP RLQNVETSAI RELFKVLGKP GLISFAGGFP DSALFDVEGL KAAADSALTT 
DAARALQYGA TEGFEPLREA IVTLMKARGA NVANTDILVT TGSQQGLDLL GKVLIGEGDT
VLTEAPTFLA AIQAFKLYGA KVAGVPTDGD GLDVDALEKV LSTARPKFLY VIPNFGNPSG
ALMSLERRKH LLDVAVRHNL LIVEDDPYGD LYFDAPPPPS LYALSQQTDG AQGRVIYLGS
LSKVVAPGLR VGWMIASQPV LGNAVMVKQF ADAHTSTFAQ ATAAAYLRSN RLETVLPRTR
AAYAERAHAM ANGLRALLPD TELTFNRPRG GMFLWCTLPG RNAGDVAKVA IERGVAFVPG
AAFYPVDPDR STLRLSYATS SLAQVEEGVR KLAHAIGEFK LG