| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_5076 |
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| Symbol | |
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| ID | 8017365 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012855 |
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| Strand | + |
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| Start bp | 365755 |
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| End bp | 367956 |
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| Gene Length | 2202 bp |
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| Protein Length | 733 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644828764 |
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| Product | integrase family protein |
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| Protein accession | YP_002979964 |
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| Protein GI | 241589939 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.821689 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0349063 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGACGC CCGACCGCCA CGAGACCGCC GCCAGCCGCC CGGGCGCCCT GCCCGCGGAT
CAGGCGATCG AAGATGTGGT TTTCCGTGAG GTGGCCGCAC CGGACGCGTC GCTCGCTGGC
CAGGCGCCCG CCACCGCCGA GAGCGCCGCA CCGGGCTGCG CCCGCCCGGC CACCGAGCGC
CGCCGCATCG GCCTGCACCA CATCGCGTTC TTCCGGACCT ACCTGGAGGG ACTGGATCTG
GCCGACGCGG CCGACCGGTA CCTGGATTTC GGCCGCGACA CGCCGCGCGC GCGCCGCACC
CAGCGCTGGC TGCTCGATGA GCTGGTCGCT GCCGCCCGCA AGCACAAGGA TTTCGCCACC
GCCCGCCTGC TGAAGATCCG CCCGGCCGCG ATCGCACCGC TGGAGGTGGG CCCGGCCGTG
CCCGGCGCCC AGCCCAAGCG GCAGGCGCCG TCGCTGGACG ACTTCGCCGC CGAACGCGAC
CCGGACGGCT TCTACACCGA GGCCGAGCTG CTTGAGCTCT TCACGGCCGA GTTTCCCGCC
GGCGGCGACA GCGAGGATCC GGCCGAGGCG GCGGTGCGCC GTCGGCAGGA ACGCAACGCC
CGGCTGCGCG CCAAGCAACT GGCGGCGTTG GCAGAGCTGG AGCGCCTGCT GGTGGAGGTG
CCCAAGCCCG AGCACCACGT GCTGGGGTGG TTCGACGTGT CGATCGCCCT GAAGCTCGCC
GACGTCGGCC TGAACACCCT GCGCGACCTG GTGCGCGCTG TGAACGCGGC CGGCTACCGC
TGGTACCGCA ACGTGCCGCG CCTCGGCGAA AAGGGCGCCG GCCGCATCAC CGCCTGGCTG
GAGGCCAACG GGAAGGCGCT GGGCATGCCG GTGGCGCAGA CCGCCCTGGC CCGTCCGCCG
CGCTGGGGGC AGCCGGTGGC GCTGGAGCGC ACGCCGTCGA CGTCGGTCGC ACCCCTCGAG
TACTTCGTGC TACCACCCAG CCTGGACGGC AGTCTCGGCA CCAATCGCGA CCTGGACTCA
CGCAACAAGA CCGAGGCGCG CGACGACAAG GCCGCGATCG ATTGGTGGCT GCGCAAGTAC
GCCGGCAATG CCAACACGCT GGCGCGCTAC CGCACCGAGG CCGAACGTCT ACTCCTGTGG
GCCGTCCTGC AGAAAGGCAA GGCGCTCTCC AGCCTGTCCA TCACCGACTG CAACGAGTAC
ATCAACACGT TTCTGCCCGC TCCGGCGCCC GCCTCGATGT GGATCATGGA GCGGGTCGAG
GCTCGATCGC ACCCGCTGTG GCGGCCCTTC CGCAAGGGGC TGGGCTACAA GAGTCGCGAC
TTGGCGCTGC AGGCCCTCAA GAGCCTGTGC GAATCGCTAA CCCGAGCCCA CTACCTCGAC
TTCAACCCGT TTTCGGAGGT CCGCCTCGCG CGCCAGATGC GACTGACCGA GGATGGCACG
CCGGCGGAAC CGGAAACCGT GACGAGCCGC ATCCACACGG AACGCAGTCT CACGCATGAC
GAATGGCAGT TCGCCGTACG CTTTCTCAAC AGCCTGCCGC CTGAAACCCC GGCCACCGAA
CGCATCCGTT TCATCCTCAT CTTCGCCTAT GGGACCGGGC TGCGCCGGGC AGAGCTGGCC
GGTGCGCGCA CGGGGCACAT TACGCGCACG TACGCGGGGC CCGAACTGGG CACCATCACG
GTCCTGCAGG TGATCGGCAA GGGCGGCAAG GAACGCTTTG TGCCACTGTC GCCGCGTCTG
CTGCAGGCGC TGTCAGCCTA CCTGGTCTAC CGTGGGCTGC CCGCCGATCC GCAGGCCTGC
CCAGCTGGCA CACCACTCAT TCCGGCACTG CAGGACAAGC GCGAACTGCA GCGGGTGCGT
GCCGTGCCAG CAGGCGCGGA TGCAGTGGTG GCCGTCGGCA GCGCCGAGAA AGCCATCAAG
TTGCCCAAGC TGTACAACGC GGTGAAGCGA TTCTTCGACA ATGCCGCGGC CGCCGCGCAC
TCTGAGGCCC CGGAATTCGC CGACGCGTTC TCGCGGGCAA CCACGCACTG GCTGCGCCAT
ACGTTCGGCT CACACGCTGT GGCTGGCGGC ATGGCGTTGG AGACCGCGCG CCAGTTCCTG
GGACACGCGT CGATCAGCAC GACGGGCATC TACTCCGTGG CCGATATCGC GCGCCAGTAC
CGCGAGGTCG ACGCGTTCAT CGAAGCGTCG TTCGGCGCGT AG
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| Protein sequence | MPTPDRHETA ASRPGALPAD QAIEDVVFRE VAAPDASLAG QAPATAESAA PGCARPATER
RRIGLHHIAF FRTYLEGLDL ADAADRYLDF GRDTPRARRT QRWLLDELVA AARKHKDFAT
ARLLKIRPAA IAPLEVGPAV PGAQPKRQAP SLDDFAAERD PDGFYTEAEL LELFTAEFPA
GGDSEDPAEA AVRRRQERNA RLRAKQLAAL AELERLLVEV PKPEHHVLGW FDVSIALKLA
DVGLNTLRDL VRAVNAAGYR WYRNVPRLGE KGAGRITAWL EANGKALGMP VAQTALARPP
RWGQPVALER TPSTSVAPLE YFVLPPSLDG SLGTNRDLDS RNKTEARDDK AAIDWWLRKY
AGNANTLARY RTEAERLLLW AVLQKGKALS SLSITDCNEY INTFLPAPAP ASMWIMERVE
ARSHPLWRPF RKGLGYKSRD LALQALKSLC ESLTRAHYLD FNPFSEVRLA RQMRLTEDGT
PAEPETVTSR IHTERSLTHD EWQFAVRFLN SLPPETPATE RIRFILIFAY GTGLRRAELA
GARTGHITRT YAGPELGTIT VLQVIGKGGK ERFVPLSPRL LQALSAYLVY RGLPADPQAC
PAGTPLIPAL QDKRELQRVR AVPAGADAVV AVGSAEKAIK LPKLYNAVKR FFDNAAAAAH
SEAPEFADAF SRATTHWLRH TFGSHAVAGG MALETARQFL GHASISTTGI YSVADIARQY
REVDAFIEAS FGA
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