| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_5055 |
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| Symbol | |
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| ID | 8017344 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012855 |
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| Strand | - |
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| Start bp | 337168 |
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| End bp | 338895 |
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| Gene Length | 1728 bp |
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| Protein Length | 575 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644828743 |
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| Product | Polypeptide-transport-associated domain protein ShlB-type |
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| Protein accession | YP_002979943 |
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| Protein GI | 241589918 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2831] Hemolysin activation/secretion protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.208925 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTTGA AGCCACTCGC CATCGCGGCG TTGCTATTGG CCAGCGCTGC CCACGCCCAA
ACGCCACCCC TCGAAGACCC GGCTCAGCGC GCGCTGCGTG AGCGCCAGGA AGCCGAACGC
CGCCGCGAGG CCACGCAACC GGCACCGCAA ATTCAGGTCA CGCCAGCGGC GACGGAGCCG
ACCAACGTTG AAGCGGTCAC TGAAGAGGGC ACCACATTTG CGATCCACCG CATCGAATTG
ACCGGCAATA CCGTGCTGGA CGCGGCCGCG GTCGAACAAA TCACGCAGCC CTTCTTGGAA
CGGGAGCTAG GTACGAATCG CATCAATCTG CTGATTCGCC GGCTCACCGA GGCCTTCGTG
CAGCAAGGTT ACGTCACCAC GCGTGCATAT CTGCCCCCGC AGAACCTCAA AGAGGGCGTT
CTCACCATCG CAGTGGTGCC CGGCAAGGTC GAGAGTCTGC AGATCAATGG GCAGACCATC
AAGACGACAG TGCCGAACCA GCCGACCGCC AGCGGCCCGC AGAACGGCGG GTGGCTGACC
GACGCTGGCA CCGTGTGGTC CATGCCCGGC GTGGGCGATA CCCTTATGCT CACGGATTTG
GAGCAGGGCG TCGATCAGAT CAACCGCCTG CGACGCAATC AGGCAGAGGT CCAGATTCTG
CCTGGCCAGA GTCCGGGCGG CTCCGTCGTT GCACTGACCA ACCAACCGGG TGACCGCTTT
CGCTTCAACG CCGGGTTCGA CAACTACGGC AGCCGCGCCA CGGGAATCTC CCGCCTGCGC
GCGGGCATCG ATGCGGACAA TGCCCTCGGC TTCCAGGAAG CCTTGTCGCT GTCCTATATC
GGTACCACGG ACACCAATGC TGCCATCGCC TCGGCCGCCG TGCCGTTCGG CTACAACACG
TTCAGCTATA CGGGCTCGAT CTCCGAGTAC AACAACCTGA TAGGCGACAC CGCGCTAATT
TACGGCCGAA CGTTCGCCCA CACGTTCGGC TGGAATCGGG TCATCGAGCG CGATCCTGCA
GGCCGCACGG CATTCGACGC GACGCTCACG CATCGACGCA CCGAGCGGGA AGTCAACAAC
CTGTTGCTCG ATCCACAGTA CCTGACGGTG CTGCGCATGG CGATCAATGG CCTGCGCAAG
TTCGCGATCG ACCAACAAGG GGCCTATGCC ACCTGGGAAG CCGGACTCTC ACGCGGAATG
CGCACGCTCG GCGCCAGCCA GGATGCACCG GATATCACGC GCGAGGAGGC GCACAGCCAG
TTCTGGAAGC TGGATGCCAA CACCAGCACC CAGTTGCCCC TGCCGAAGGT GGGTAACGCC
GTGTTGGCCT ACCGCGGACA GGCTCTGGCG CAATGGTCCA ACGTCGCGCT ATTTGGATCG
GAGCAGATTT TCGCCGGCGG CATGAGTTCG GTGCGCGGCT TCCGCGAGGG ACTGATCAGT
GGCGACCGGG GCTTGACGCT GCGCAACGAA GTGGTATGGG CCAACGCTCC TGCGATCTGG
GGCGTGCGCA TCGAGCCCTA TGCCTTCCTC GATGGCGGGC AGACGCAGCT CGTGGCGACC
AAGCACTGGC AATACCTGGC CGGTGGCGGA GCCGGCGTGC GACTGTCAGC AAAACTTGGC
AAGACGGCGC TCACGAGCGA GTTGCTGCTG GGTCGAGCAC TGGTACAGCC GGCGGAACTC
GGCAGCAAGG CAACGGTCTT GCTGGCCACC TTGAACCTCG TTTATTAG
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| Protein sequence | MTLKPLAIAA LLLASAAHAQ TPPLEDPAQR ALRERQEAER RREATQPAPQ IQVTPAATEP
TNVEAVTEEG TTFAIHRIEL TGNTVLDAAA VEQITQPFLE RELGTNRINL LIRRLTEAFV
QQGYVTTRAY LPPQNLKEGV LTIAVVPGKV ESLQINGQTI KTTVPNQPTA SGPQNGGWLT
DAGTVWSMPG VGDTLMLTDL EQGVDQINRL RRNQAEVQIL PGQSPGGSVV ALTNQPGDRF
RFNAGFDNYG SRATGISRLR AGIDADNALG FQEALSLSYI GTTDTNAAIA SAAVPFGYNT
FSYTGSISEY NNLIGDTALI YGRTFAHTFG WNRVIERDPA GRTAFDATLT HRRTEREVNN
LLLDPQYLTV LRMAINGLRK FAIDQQGAYA TWEAGLSRGM RTLGASQDAP DITREEAHSQ
FWKLDANTST QLPLPKVGNA VLAYRGQALA QWSNVALFGS EQIFAGGMSS VRGFREGLIS
GDRGLTLRNE VVWANAPAIW GVRIEPYAFL DGGQTQLVAT KHWQYLAGGG AGVRLSAKLG
KTALTSELLL GRALVQPAEL GSKATVLLAT LNLVY
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