| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_4985 |
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| Symbol | |
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| ID | 8017412 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012855 |
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| Strand | + |
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| Start bp | 275310 |
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| End bp | 277409 |
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| Gene Length | 2100 bp |
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| Protein Length | 699 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 644828673 |
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| Product | diguanylate cyclase/phosphodiesterase with MHYT sensor |
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| Protein accession | YP_002979873 |
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| Protein GI | 241589848 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.73967 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0333981 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACAGGTT CGCAAAACTA CGCACTGGTC GCGGTTTCGG TCCTCGTTGC CGCCTTCACG
TCCTACACGG CGCTGGATAT CAGTGCCCGC ATCCGTCTCT CGACCGATCT TGCAAAGCGT
TTCTCCTGGC TACTAGGCGG CACGTTTGCG ATTGCCACGG GACTTTGGGC CACCCATATC
CTGGGGATGC TAGCTTTTAC GTTACCGTTC CCAGTTGGGC ACGGCACTTG GATCACTCTC
AAGTCGTTCG GCCTTGCATT GCTAGTGTCG TATCTGACGC TGGATGCCGC GACTAGGCCG
AATCCGACGC GTCAGATTGT CGTACTCACC GGTATCGTTA CCGGCGTGGG CCTGTCGCTG
ATGAGCTTTA CCGCGGTGCA GGCGGTTCGC ATCGACCCGG GAGTGACGTA CTCCCCTGGC
GTATTCGGCA GCTCCATGAT CCTGGCCATC GCGGCCACTA CCGCGGCATT GCTTGTTCGC
ATTCGGCTGG GACAATCAGA CGCCCACCAG ATCATGGTCG ACCGAGTCGC TGCGAGTGGG
TTGATCGGAG CATCCATTGG CGGCGGCCAC TACCTATCGC TCCTCGCGGT TGTGGTAGCG
CCGAAAAGCC GATCCCTCGT AGTGACCAGC GCCACTGCGG GTGGAGAAGC GTTGATCGCC
GTTGTGGTGA GTTCCGTCTT CATCGTCTCT TTTGCACTGC TGCTGTCGGT ACTGGGGTTC
CGGCATGAGC GCGAACGCAT CTGTCTGACA TCTTCCCTCC GAGAAGCGAG GCAGCGGTTG
ACGATGCTTG CCTCTATCGA CCATCTGACG TCATTGCCGA ATCGTGAGGC TATCTACCGG
AGCATTCAGG AGGAGATCGC CGGCGCGACT GGTTCCGGCA CCGGCTTCCA TGTCCTGCAT
GTCAACCTCG ATTCCTTCAA GGTCTTCAAT GACTCATACG GCATGGCAAT CGGCGACAGT
TTGCTGCGGA TTGTTGCGGT GAAACTTGTC GAGGCTGCGG GGCGAAGCGC AGTTGTTGGC
CGCCTTGGTG GCGATGAGTT CGTCTTGGTC GTTCGCGACG CGAACATGGA ACAGGTGCTG
GACCTTGCCA GCAACCTTGT GGAAAGCATG CGAGGCGGAA TCTCGGTGGA CAACGCAACC
ACCGTGAGGG TGACGCTGTC CATCGGCATT GCCTCGTACC CGAAGGATGG GGAGGCGGCT
GAATCACTGC TGAAGAATGC TGATGGAGCG ATGTCGGCAG CCAAGGCTGC TGGCGGAAAT
GGCTTCCGAT TCTACGGGCC GGACATCAGC GAGAACTCAA CCAGGCGCCT GCAGATTATG
CAGGCCCTGC AAGATACAGT CGAGAAGGGC GGCTTCAAAC TCCATTTCCA GCCAAAATTT
GGATGTGATG GCCAGTCGAT CGAAGGTGCA GAGGCACTGA TTCGATGGAC GCATCCGGAC
CTCGGCGTCG TCCCCCCCCT CGACTTCATT CCGTTGGCAG AGCGCACGGG TCTGATCTCT
CAGATTGGTA ACTGGGTGAT TGGCCAAACC TGCCGGCATA TTCTGGAGTG GGATCGTGCG
GGACTGCCGC CATTGCGAAT TGCGGTGAAT CTCTCGCCGC AACAGCTTCA GCAGCCAGGG
TACATCCGGA CGGTCAACGA GATTGTCGGC CAGCACGGCG TGGATCCGCG CCGCCTGATG
TTTGAGATTA CGGAGACAGT AGCGATGGAG GTTGCCGAGC AGACAACCGC CAACATCCGA
GAGTTCCAAA CATCGGGATT CGACATCGCG ATCGACGATT TCGGAACTGG CTACTCGAGT
CTGGCTTACC TGCAGCGTTT TAGGGCCAAG CAACTCAAGA TCGATCGGTT CTTTACGAGG
GGCCTCGATG AGCATGGTGA CGAGGGATAC GCCATAGTTT CGGCGATCAT TGGCCTCGCC
CACTCCCTTC GAATGCAGGT TGTAGCGGAG GGTGTGGAGA CGCAGTCTCA ACTGCAGAAG
CTTCGTGACA TGAGTTGCGA CCAAGTACAG GGATTTCTGC TCGGGAAGCC CATGGGCGCT
GAAGATTTCG CAGCCTTTGT TCTGGAGCAG GCGAGCCAGC CGGACCTAGA GCCAGTTTGA
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| Protein sequence | MTGSQNYALV AVSVLVAAFT SYTALDISAR IRLSTDLAKR FSWLLGGTFA IATGLWATHI
LGMLAFTLPF PVGHGTWITL KSFGLALLVS YLTLDAATRP NPTRQIVVLT GIVTGVGLSL
MSFTAVQAVR IDPGVTYSPG VFGSSMILAI AATTAALLVR IRLGQSDAHQ IMVDRVAASG
LIGASIGGGH YLSLLAVVVA PKSRSLVVTS ATAGGEALIA VVVSSVFIVS FALLLSVLGF
RHERERICLT SSLREARQRL TMLASIDHLT SLPNREAIYR SIQEEIAGAT GSGTGFHVLH
VNLDSFKVFN DSYGMAIGDS LLRIVAVKLV EAAGRSAVVG RLGGDEFVLV VRDANMEQVL
DLASNLVESM RGGISVDNAT TVRVTLSIGI ASYPKDGEAA ESLLKNADGA MSAAKAAGGN
GFRFYGPDIS ENSTRRLQIM QALQDTVEKG GFKLHFQPKF GCDGQSIEGA EALIRWTHPD
LGVVPPLDFI PLAERTGLIS QIGNWVIGQT CRHILEWDRA GLPPLRIAVN LSPQQLQQPG
YIRTVNEIVG QHGVDPRRLM FEITETVAME VAEQTTANIR EFQTSGFDIA IDDFGTGYSS
LAYLQRFRAK QLKIDRFFTR GLDEHGDEGY AIVSAIIGLA HSLRMQVVAE GVETQSQLQK
LRDMSCDQVQ GFLLGKPMGA EDFAAFVLEQ ASQPDLEPV
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