Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_4985 |
Symbol | |
ID | 8017412 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012855 |
Strand | + |
Start bp | 275310 |
End bp | 277409 |
Gene Length | 2100 bp |
Protein Length | 699 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 644828673 |
Product | diguanylate cyclase/phosphodiesterase with MHYT sensor |
Protein accession | YP_002979873 |
Protein GI | 241589848 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.73967 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0333981 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGACAGGTT CGCAAAACTA CGCACTGGTC GCGGTTTCGG TCCTCGTTGC CGCCTTCACG TCCTACACGG CGCTGGATAT CAGTGCCCGC ATCCGTCTCT CGACCGATCT TGCAAAGCGT TTCTCCTGGC TACTAGGCGG CACGTTTGCG ATTGCCACGG GACTTTGGGC CACCCATATC CTGGGGATGC TAGCTTTTAC GTTACCGTTC CCAGTTGGGC ACGGCACTTG GATCACTCTC AAGTCGTTCG GCCTTGCATT GCTAGTGTCG TATCTGACGC TGGATGCCGC GACTAGGCCG AATCCGACGC GTCAGATTGT CGTACTCACC GGTATCGTTA CCGGCGTGGG CCTGTCGCTG ATGAGCTTTA CCGCGGTGCA GGCGGTTCGC ATCGACCCGG GAGTGACGTA CTCCCCTGGC GTATTCGGCA GCTCCATGAT CCTGGCCATC GCGGCCACTA CCGCGGCATT GCTTGTTCGC ATTCGGCTGG GACAATCAGA CGCCCACCAG ATCATGGTCG ACCGAGTCGC TGCGAGTGGG TTGATCGGAG CATCCATTGG CGGCGGCCAC TACCTATCGC TCCTCGCGGT TGTGGTAGCG CCGAAAAGCC GATCCCTCGT AGTGACCAGC GCCACTGCGG GTGGAGAAGC GTTGATCGCC GTTGTGGTGA GTTCCGTCTT CATCGTCTCT TTTGCACTGC TGCTGTCGGT ACTGGGGTTC CGGCATGAGC GCGAACGCAT CTGTCTGACA TCTTCCCTCC GAGAAGCGAG GCAGCGGTTG ACGATGCTTG CCTCTATCGA CCATCTGACG TCATTGCCGA ATCGTGAGGC TATCTACCGG AGCATTCAGG AGGAGATCGC CGGCGCGACT GGTTCCGGCA CCGGCTTCCA TGTCCTGCAT GTCAACCTCG ATTCCTTCAA GGTCTTCAAT GACTCATACG GCATGGCAAT CGGCGACAGT TTGCTGCGGA TTGTTGCGGT GAAACTTGTC GAGGCTGCGG GGCGAAGCGC AGTTGTTGGC CGCCTTGGTG GCGATGAGTT CGTCTTGGTC GTTCGCGACG CGAACATGGA ACAGGTGCTG GACCTTGCCA GCAACCTTGT GGAAAGCATG CGAGGCGGAA TCTCGGTGGA CAACGCAACC ACCGTGAGGG TGACGCTGTC CATCGGCATT GCCTCGTACC CGAAGGATGG GGAGGCGGCT GAATCACTGC TGAAGAATGC TGATGGAGCG ATGTCGGCAG CCAAGGCTGC TGGCGGAAAT GGCTTCCGAT TCTACGGGCC GGACATCAGC GAGAACTCAA CCAGGCGCCT GCAGATTATG CAGGCCCTGC AAGATACAGT CGAGAAGGGC GGCTTCAAAC TCCATTTCCA GCCAAAATTT GGATGTGATG GCCAGTCGAT CGAAGGTGCA GAGGCACTGA TTCGATGGAC GCATCCGGAC CTCGGCGTCG TCCCCCCCCT CGACTTCATT CCGTTGGCAG AGCGCACGGG TCTGATCTCT CAGATTGGTA ACTGGGTGAT TGGCCAAACC TGCCGGCATA TTCTGGAGTG GGATCGTGCG GGACTGCCGC CATTGCGAAT TGCGGTGAAT CTCTCGCCGC AACAGCTTCA GCAGCCAGGG TACATCCGGA CGGTCAACGA GATTGTCGGC CAGCACGGCG TGGATCCGCG CCGCCTGATG TTTGAGATTA CGGAGACAGT AGCGATGGAG GTTGCCGAGC AGACAACCGC CAACATCCGA GAGTTCCAAA CATCGGGATT CGACATCGCG ATCGACGATT TCGGAACTGG CTACTCGAGT CTGGCTTACC TGCAGCGTTT TAGGGCCAAG CAACTCAAGA TCGATCGGTT CTTTACGAGG GGCCTCGATG AGCATGGTGA CGAGGGATAC GCCATAGTTT CGGCGATCAT TGGCCTCGCC CACTCCCTTC GAATGCAGGT TGTAGCGGAG GGTGTGGAGA CGCAGTCTCA ACTGCAGAAG CTTCGTGACA TGAGTTGCGA CCAAGTACAG GGATTTCTGC TCGGGAAGCC CATGGGCGCT GAAGATTTCG CAGCCTTTGT TCTGGAGCAG GCGAGCCAGC CGGACCTAGA GCCAGTTTGA
|
Protein sequence | MTGSQNYALV AVSVLVAAFT SYTALDISAR IRLSTDLAKR FSWLLGGTFA IATGLWATHI LGMLAFTLPF PVGHGTWITL KSFGLALLVS YLTLDAATRP NPTRQIVVLT GIVTGVGLSL MSFTAVQAVR IDPGVTYSPG VFGSSMILAI AATTAALLVR IRLGQSDAHQ IMVDRVAASG LIGASIGGGH YLSLLAVVVA PKSRSLVVTS ATAGGEALIA VVVSSVFIVS FALLLSVLGF RHERERICLT SSLREARQRL TMLASIDHLT SLPNREAIYR SIQEEIAGAT GSGTGFHVLH VNLDSFKVFN DSYGMAIGDS LLRIVAVKLV EAAGRSAVVG RLGGDEFVLV VRDANMEQVL DLASNLVESM RGGISVDNAT TVRVTLSIGI ASYPKDGEAA ESLLKNADGA MSAAKAAGGN GFRFYGPDIS ENSTRRLQIM QALQDTVEKG GFKLHFQPKF GCDGQSIEGA EALIRWTHPD LGVVPPLDFI PLAERTGLIS QIGNWVIGQT CRHILEWDRA GLPPLRIAVN LSPQQLQQPG YIRTVNEIVG QHGVDPRRLM FEITETVAME VAEQTTANIR EFQTSGFDIA IDDFGTGYSS LAYLQRFRAK QLKIDRFFTR GLDEHGDEGY AIVSAIIGLA HSLRMQVVAE GVETQSQLQK LRDMSCDQVQ GFLLGKPMGA EDFAAFVLEQ ASQPDLEPV
|
| |