Gene Rpic12D_4985 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_4985 
Symbol 
ID8017412 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012855 
Strand
Start bp275310 
End bp277409 
Gene Length2100 bp 
Protein Length699 aa 
Translation table11 
GC content58% 
IMG OID644828673 
Productdiguanylate cyclase/phosphodiesterase with MHYT sensor 
Protein accessionYP_002979873 
Protein GI241589848 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.73967 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.0333981 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACAGGTT CGCAAAACTA CGCACTGGTC GCGGTTTCGG TCCTCGTTGC CGCCTTCACG 
TCCTACACGG CGCTGGATAT CAGTGCCCGC ATCCGTCTCT CGACCGATCT TGCAAAGCGT
TTCTCCTGGC TACTAGGCGG CACGTTTGCG ATTGCCACGG GACTTTGGGC CACCCATATC
CTGGGGATGC TAGCTTTTAC GTTACCGTTC CCAGTTGGGC ACGGCACTTG GATCACTCTC
AAGTCGTTCG GCCTTGCATT GCTAGTGTCG TATCTGACGC TGGATGCCGC GACTAGGCCG
AATCCGACGC GTCAGATTGT CGTACTCACC GGTATCGTTA CCGGCGTGGG CCTGTCGCTG
ATGAGCTTTA CCGCGGTGCA GGCGGTTCGC ATCGACCCGG GAGTGACGTA CTCCCCTGGC
GTATTCGGCA GCTCCATGAT CCTGGCCATC GCGGCCACTA CCGCGGCATT GCTTGTTCGC
ATTCGGCTGG GACAATCAGA CGCCCACCAG ATCATGGTCG ACCGAGTCGC TGCGAGTGGG
TTGATCGGAG CATCCATTGG CGGCGGCCAC TACCTATCGC TCCTCGCGGT TGTGGTAGCG
CCGAAAAGCC GATCCCTCGT AGTGACCAGC GCCACTGCGG GTGGAGAAGC GTTGATCGCC
GTTGTGGTGA GTTCCGTCTT CATCGTCTCT TTTGCACTGC TGCTGTCGGT ACTGGGGTTC
CGGCATGAGC GCGAACGCAT CTGTCTGACA TCTTCCCTCC GAGAAGCGAG GCAGCGGTTG
ACGATGCTTG CCTCTATCGA CCATCTGACG TCATTGCCGA ATCGTGAGGC TATCTACCGG
AGCATTCAGG AGGAGATCGC CGGCGCGACT GGTTCCGGCA CCGGCTTCCA TGTCCTGCAT
GTCAACCTCG ATTCCTTCAA GGTCTTCAAT GACTCATACG GCATGGCAAT CGGCGACAGT
TTGCTGCGGA TTGTTGCGGT GAAACTTGTC GAGGCTGCGG GGCGAAGCGC AGTTGTTGGC
CGCCTTGGTG GCGATGAGTT CGTCTTGGTC GTTCGCGACG CGAACATGGA ACAGGTGCTG
GACCTTGCCA GCAACCTTGT GGAAAGCATG CGAGGCGGAA TCTCGGTGGA CAACGCAACC
ACCGTGAGGG TGACGCTGTC CATCGGCATT GCCTCGTACC CGAAGGATGG GGAGGCGGCT
GAATCACTGC TGAAGAATGC TGATGGAGCG ATGTCGGCAG CCAAGGCTGC TGGCGGAAAT
GGCTTCCGAT TCTACGGGCC GGACATCAGC GAGAACTCAA CCAGGCGCCT GCAGATTATG
CAGGCCCTGC AAGATACAGT CGAGAAGGGC GGCTTCAAAC TCCATTTCCA GCCAAAATTT
GGATGTGATG GCCAGTCGAT CGAAGGTGCA GAGGCACTGA TTCGATGGAC GCATCCGGAC
CTCGGCGTCG TCCCCCCCCT CGACTTCATT CCGTTGGCAG AGCGCACGGG TCTGATCTCT
CAGATTGGTA ACTGGGTGAT TGGCCAAACC TGCCGGCATA TTCTGGAGTG GGATCGTGCG
GGACTGCCGC CATTGCGAAT TGCGGTGAAT CTCTCGCCGC AACAGCTTCA GCAGCCAGGG
TACATCCGGA CGGTCAACGA GATTGTCGGC CAGCACGGCG TGGATCCGCG CCGCCTGATG
TTTGAGATTA CGGAGACAGT AGCGATGGAG GTTGCCGAGC AGACAACCGC CAACATCCGA
GAGTTCCAAA CATCGGGATT CGACATCGCG ATCGACGATT TCGGAACTGG CTACTCGAGT
CTGGCTTACC TGCAGCGTTT TAGGGCCAAG CAACTCAAGA TCGATCGGTT CTTTACGAGG
GGCCTCGATG AGCATGGTGA CGAGGGATAC GCCATAGTTT CGGCGATCAT TGGCCTCGCC
CACTCCCTTC GAATGCAGGT TGTAGCGGAG GGTGTGGAGA CGCAGTCTCA ACTGCAGAAG
CTTCGTGACA TGAGTTGCGA CCAAGTACAG GGATTTCTGC TCGGGAAGCC CATGGGCGCT
GAAGATTTCG CAGCCTTTGT TCTGGAGCAG GCGAGCCAGC CGGACCTAGA GCCAGTTTGA
 
Protein sequence
MTGSQNYALV AVSVLVAAFT SYTALDISAR IRLSTDLAKR FSWLLGGTFA IATGLWATHI 
LGMLAFTLPF PVGHGTWITL KSFGLALLVS YLTLDAATRP NPTRQIVVLT GIVTGVGLSL
MSFTAVQAVR IDPGVTYSPG VFGSSMILAI AATTAALLVR IRLGQSDAHQ IMVDRVAASG
LIGASIGGGH YLSLLAVVVA PKSRSLVVTS ATAGGEALIA VVVSSVFIVS FALLLSVLGF
RHERERICLT SSLREARQRL TMLASIDHLT SLPNREAIYR SIQEEIAGAT GSGTGFHVLH
VNLDSFKVFN DSYGMAIGDS LLRIVAVKLV EAAGRSAVVG RLGGDEFVLV VRDANMEQVL
DLASNLVESM RGGISVDNAT TVRVTLSIGI ASYPKDGEAA ESLLKNADGA MSAAKAAGGN
GFRFYGPDIS ENSTRRLQIM QALQDTVEKG GFKLHFQPKF GCDGQSIEGA EALIRWTHPD
LGVVPPLDFI PLAERTGLIS QIGNWVIGQT CRHILEWDRA GLPPLRIAVN LSPQQLQQPG
YIRTVNEIVG QHGVDPRRLM FEITETVAME VAEQTTANIR EFQTSGFDIA IDDFGTGYSS
LAYLQRFRAK QLKIDRFFTR GLDEHGDEGY AIVSAIIGLA HSLRMQVVAE GVETQSQLQK
LRDMSCDQVQ GFLLGKPMGA EDFAAFVLEQ ASQPDLEPV