Gene Rpic12D_4962 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_4962 
Symbol 
ID8017243 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012855 
Strand
Start bp253368 
End bp254432 
Gene Length1065 bp 
Protein Length354 aa 
Translation table11 
GC content62% 
IMG OID644828650 
Productporin Gram-negative type 
Protein accessionYP_002979850 
Protein GI241589825 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0589815 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.0680007 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGAGAC AAATCATCGC GCGTGCCGGT GGCGCGCTTC TGGCGCTCGC CGGTACGGCA 
GCCCATGCAC AAAGTTCGGT CACCCTTTAC GGCATCGTTG ATACGGGTGT GGAGTACGTC
AACCGGGTGG CGCAAGGTGC CAGCAAGGGC TCGGTGGTAC GCGAGCAGTC TGGCAATCTC
GCCGGATCGC GCTGGGGGCT GAAGGGATCG GAGGATCTTG GCGGCGGCTA CAAGGCAATG
ATGACGCTGG AGGGCGGATT CAACTCGGAT ACAGGCACGC TCGGACAGAG CGGGCGGCTC
TTCGGCCGCA AGGCCTTCGT TGGTCTCGCC ACGCCAAGCG GCACGCTGAC GCTGGGGCGT
CACCAGAACC TGCTCTATGA GTTGATGTTC AAGTATGACC CGCTGACGTT CAACCCAAGC
TACTCCGCAC AGAGCATGGA CAGCCAGTTC GTGAATCGCG CGGACAATTC GGTGCGCTAT
GGCTTGAATC TGGGCGGTGT GACGTTTGCA GCGTTGTACA GTGCGGGCTT CGACGCGGCC
ATTCAGAATG GCGGCGAGGT GCCGGGTGCT TCGAAGGTGG GGCGCGAAAT GAGCGCTGCG
ATCCTGTACG ACCAGGGTCC GTTTAGCGTC GGCGTGACCT ATGATCAATT GCAGGGCACG
TCGATCGCCA CGCAAAGCAA TACCCAGCAG CGCACGCTGC TGGGCCTGTC GTACCAGATC
GGACCGGTCA AGGCACTGGC AGGTCTGCGC TGGTTGAATA CGCGCAACAC GGATGCGCCG
CCGAGTTCCT GGCTGTACTG GGGTGGCATG ACCTGGCAGG TGAACGCGCC GCTGTCGATT
TCGGCCAGCG TCTACCACAC GCACTTCCGC GAATCTAACG GCGGGCCGAC GATGGGGGCA
TTGCTGGTCG ACTACGCATT ATCCAAGCGC ACAGACGTGT ATGCGGAGGG CGCGTACGTT
GCCAACCGGT CAACGACCAA TGTTGGCATT CGCGGTACCG GCGTGGACGT TGTGGCGGGC
ATGAACCAGG CGGGTGTGAC GGTCGGTATT CGCCATCTCT TCTGA
 
Protein sequence
MTRQIIARAG GALLALAGTA AHAQSSVTLY GIVDTGVEYV NRVAQGASKG SVVREQSGNL 
AGSRWGLKGS EDLGGGYKAM MTLEGGFNSD TGTLGQSGRL FGRKAFVGLA TPSGTLTLGR
HQNLLYELMF KYDPLTFNPS YSAQSMDSQF VNRADNSVRY GLNLGGVTFA ALYSAGFDAA
IQNGGEVPGA SKVGREMSAA ILYDQGPFSV GVTYDQLQGT SIATQSNTQQ RTLLGLSYQI
GPVKALAGLR WLNTRNTDAP PSSWLYWGGM TWQVNAPLSI SASVYHTHFR ESNGGPTMGA
LLVDYALSKR TDVYAEGAYV ANRSTTNVGI RGTGVDVVAG MNQAGVTVGI RHLF