Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_4962 |
Symbol | |
ID | 8017243 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012855 |
Strand | - |
Start bp | 253368 |
End bp | 254432 |
Gene Length | 1065 bp |
Protein Length | 354 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 644828650 |
Product | porin Gram-negative type |
Protein accession | YP_002979850 |
Protein GI | 241589825 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0589815 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.0680007 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACGAGAC AAATCATCGC GCGTGCCGGT GGCGCGCTTC TGGCGCTCGC CGGTACGGCA GCCCATGCAC AAAGTTCGGT CACCCTTTAC GGCATCGTTG ATACGGGTGT GGAGTACGTC AACCGGGTGG CGCAAGGTGC CAGCAAGGGC TCGGTGGTAC GCGAGCAGTC TGGCAATCTC GCCGGATCGC GCTGGGGGCT GAAGGGATCG GAGGATCTTG GCGGCGGCTA CAAGGCAATG ATGACGCTGG AGGGCGGATT CAACTCGGAT ACAGGCACGC TCGGACAGAG CGGGCGGCTC TTCGGCCGCA AGGCCTTCGT TGGTCTCGCC ACGCCAAGCG GCACGCTGAC GCTGGGGCGT CACCAGAACC TGCTCTATGA GTTGATGTTC AAGTATGACC CGCTGACGTT CAACCCAAGC TACTCCGCAC AGAGCATGGA CAGCCAGTTC GTGAATCGCG CGGACAATTC GGTGCGCTAT GGCTTGAATC TGGGCGGTGT GACGTTTGCA GCGTTGTACA GTGCGGGCTT CGACGCGGCC ATTCAGAATG GCGGCGAGGT GCCGGGTGCT TCGAAGGTGG GGCGCGAAAT GAGCGCTGCG ATCCTGTACG ACCAGGGTCC GTTTAGCGTC GGCGTGACCT ATGATCAATT GCAGGGCACG TCGATCGCCA CGCAAAGCAA TACCCAGCAG CGCACGCTGC TGGGCCTGTC GTACCAGATC GGACCGGTCA AGGCACTGGC AGGTCTGCGC TGGTTGAATA CGCGCAACAC GGATGCGCCG CCGAGTTCCT GGCTGTACTG GGGTGGCATG ACCTGGCAGG TGAACGCGCC GCTGTCGATT TCGGCCAGCG TCTACCACAC GCACTTCCGC GAATCTAACG GCGGGCCGAC GATGGGGGCA TTGCTGGTCG ACTACGCATT ATCCAAGCGC ACAGACGTGT ATGCGGAGGG CGCGTACGTT GCCAACCGGT CAACGACCAA TGTTGGCATT CGCGGTACCG GCGTGGACGT TGTGGCGGGC ATGAACCAGG CGGGTGTGAC GGTCGGTATT CGCCATCTCT TCTGA
|
Protein sequence | MTRQIIARAG GALLALAGTA AHAQSSVTLY GIVDTGVEYV NRVAQGASKG SVVREQSGNL AGSRWGLKGS EDLGGGYKAM MTLEGGFNSD TGTLGQSGRL FGRKAFVGLA TPSGTLTLGR HQNLLYELMF KYDPLTFNPS YSAQSMDSQF VNRADNSVRY GLNLGGVTFA ALYSAGFDAA IQNGGEVPGA SKVGREMSAA ILYDQGPFSV GVTYDQLQGT SIATQSNTQQ RTLLGLSYQI GPVKALAGLR WLNTRNTDAP PSSWLYWGGM TWQVNAPLSI SASVYHTHFR ESNGGPTMGA LLVDYALSKR TDVYAEGAYV ANRSTTNVGI RGTGVDVVAG MNQAGVTVGI RHLF
|
| |