| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_4759 |
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| Symbol | |
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| ID | 8017471 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012855 |
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| Strand | + |
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| Start bp | 103927 |
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| End bp | 105717 |
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| Gene Length | 1791 bp |
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| Protein Length | 596 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 644828448 |
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| Product | hypothetical protein |
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| Protein accession | YP_002979648 |
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| Protein GI | 241589623 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02520] type IVB pilus formation outer membrane protein, R64 PilN family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.8477 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGTG AGATCAAGGC CCTCGTGCTG ATGCCGCTTG TGGCGGCACT GACTCTGTCG
GGGTGCGTGT CACCCACACT GGAGCGGCAA ACCAAAGGCA CGGTGGAAGA CAACACGCGG
ATCCAGGGCG AAGGGCGACA GGAGCTTATC GACCAAATTC TCAACAGCCG GAAGGTGCGC
GAGCGCGATG AGATGGTTGA CGCGCCATTC TTGGCTGGCA AGGCAGTTGC GCTCAACCGG
GAAGTCGTCC TGCCGTTGGC ACTTCGGAAG AACGTCAAGG TCGAGGTGAT GTTTCCGGGG
CGCCGTGTGA CTCTCCCCGT TGCAGCAGAA CGAATTACGC TGGCAACTGG CATCCCGGTA
AAAATTGACT CTGATGTGTA CTTGCCGGCG TCAGCTTTGC TGCCCAAAGG TCAAGCCGGC
GATGACGCTA AGGGCGCTCT TGCAGGTCAG GCAGGTGGTG CACGCGCTGG AGGTGCGCTC
GCCCCTGCCG CCGGTGGGAA GGGGGTTCTC CCTCCGATCC CGAATGCTAC GGAGGGATTG
GGTGGTCTCC AGGGATACTC GGGTGCCGCC TCGATCGATA CCCCAATGGA TGTCCAGTTT
GAACCGGGCG AGATGGCCCT GTCGAAGACT CTCGATCTCA TCTCGACTCG ACTCGGCATC
AACTGGAACT ACGACGATCA GAAGGGCGTT ATTCGGTTCT ACCGAATGGT GACGAAGACC
TGGTTGCTTC CGATCAAGCC CGGGTCTATG TCTTACACAA CAGCGTTTAA GGGTTCGACC
ATGCAGTCGA ACAATTCCAA CGCGCTCAAC ACGCAGGCAC AGGGTCAAGA CGCTCCGATT
AAGAGTGAGG CGACGAACAT CAGCGAGGTT GAATCGGTCA AGTCTTCGAT CGGTACGATC
ATGACACGCG CAGGTTCAAT CTCGGCGGAC CCGGCGCTTG GATCAATCAC ACTGACCGAC
ACGAAAGAGG CAGTCGACAA GGCAGACGAA ATCGTCAAGT TCTCGACAAG TGTCCTGTCG
AAGATGGTGC TGGTGCGTCT CCAACTGATC CAGGTTACCA CCAAGGACAA CGGGCAAGCG
GCCGTGAACT GGAACGCGGT CATGACCAAA GCACTGGAAC ACATTCCTGG GTTCCAGCTG
TCGTCGATTT CGCCAGTCTC CCTCATTGGT CAGAGTGGTG GCCTCAATAA TTCGGGGTCG
ATCGGCCTGA ACATTACCAG CGGTGGGTTT ACAGGCACGC AGGCGATTGT GCAGGCGCTC
GAGGAACTCG GTCGCGTCTC CACCACAACG GAAATTCCGC TGTCGATCCA GAACCGGCAC
GGCATGTATT ACAACGTGCG CCAGACGTAC TCCTACGTTT CGGGGACGAC TCCCGCAACC
GCTACTGCAG GTGGCACGGG CGGCGTACCG GGTATCACGA CAGCCCAGGA TCAGGTCGGC
TTCAAGCTGA TGATCTATCC GAGTGTTACG AGTCGAGGCT CGATCAATAT GACTGTCTCA
ATTGATCAGT CGACCTTGCA GGGCCTCGAC AAGTTCACTT CCGGATCCGG CGCGAATCAG
CAGACCGTCC AGTTGCCAAA CACGAATGGC GAGGGTGCGA CGATCGATGC GATCGTGAAC
AATGGCGGGA CCCTCATCCT GACCGGCTTC GAGCAAAAGC AGAATCAGTT CGACCGTCGG
GGCCTAGCTC CCGATGTTCC TCTGATCGCT GGCGGGTCGA AGGCGGCCAG CACTCAGCGC
ACTACGACGA TCATCATTCT ATCCGCCGCA GTTCAGGACG CCGACTCATG A
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| Protein sequence | MKREIKALVL MPLVAALTLS GCVSPTLERQ TKGTVEDNTR IQGEGRQELI DQILNSRKVR
ERDEMVDAPF LAGKAVALNR EVVLPLALRK NVKVEVMFPG RRVTLPVAAE RITLATGIPV
KIDSDVYLPA SALLPKGQAG DDAKGALAGQ AGGARAGGAL APAAGGKGVL PPIPNATEGL
GGLQGYSGAA SIDTPMDVQF EPGEMALSKT LDLISTRLGI NWNYDDQKGV IRFYRMVTKT
WLLPIKPGSM SYTTAFKGST MQSNNSNALN TQAQGQDAPI KSEATNISEV ESVKSSIGTI
MTRAGSISAD PALGSITLTD TKEAVDKADE IVKFSTSVLS KMVLVRLQLI QVTTKDNGQA
AVNWNAVMTK ALEHIPGFQL SSISPVSLIG QSGGLNNSGS IGLNITSGGF TGTQAIVQAL
EELGRVSTTT EIPLSIQNRH GMYYNVRQTY SYVSGTTPAT ATAGGTGGVP GITTAQDQVG
FKLMIYPSVT SRGSINMTVS IDQSTLQGLD KFTSGSGANQ QTVQLPNTNG EGATIDAIVN
NGGTLILTGF EQKQNQFDRR GLAPDVPLIA GGSKAASTQR TTTIIILSAA VQDADS
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