| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_4747 |
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| Symbol | |
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| ID | 8017322 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012855 |
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| Strand | + |
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| Start bp | 90617 |
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| End bp | 93151 |
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| Gene Length | 2535 bp |
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| Protein Length | 844 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644828436 |
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| Product | type IV secretory pathway VirB4 components-like protein |
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| Protein accession | YP_002979636 |
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| Protein GI | 241589611 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.290977 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGAGCA TTAAGGCGAT CCTCGGCTCG TACCTCAAAT CAGTCCGTAG CTTCTCAGAG
ATGGTTCCGT GGATGGGGCT GAATGCCTCA GACATGGTCT TCAACGTTGA TGGGTCGTTG
ATGGTCGTCT ATGAGGTTGC TGGTATCGAT GCAGAGGGGC GCCTTCCGAT TGAGACTGAC
GGCTACGTTG AGAACTTCGA GCGCGCCCTC AAGGTCTTTG ACGAGCACAT CCTTGTTTGG
TCGATCATGG ACCGCCGCCG GACTGAGCAG TATCCGGACG CGGACTTTCC GACGCCGATC
GGCAAGTACC TCGACTTGAC CTGGAAGCAG CATCTGTTCG GGCAACGTCA GTATGAGAAC
CGGCACTACT TCGCCGTTAT CTACCGAAAC CTCGGTGGGA CGTCTGGTTT TTTCGACAAG
CTGTCGAACC ATATGGATCG CTACAAGGTT GGGATTCTTC CGGCCTTGTG GAAGATCGGG
ACGGCTGCCA CGTCAGCGCG TAAGAACGCA TCGTTTGCGT TCGAACAGTT CGACTCGCAT
GAGAACCATT TTCGTCAGAT TCTTGAGGAG TTCGAGACGA CTGTGAGTTC TCTTGGATTC
AAGAAGCTGC ATAACAGCGA GTTGCTGACG TTTATGCACC GACGCGTTAG CCCGCCGAAT
GACCACCATC GCGTGGCCAT GCCCGACACG CCCGTCTATC TCAACACATA TCTTCCCGAT
TCGACGCTTC GTAGGAAGAA AAAGCACCTC GAGTTCGAGG GCGACGTGGT CCGCTACGTC
GGCGCCATGA GTGTAAAGAA CTGGCCAAAC GTAATCGGCC CAGGCGTTAC GGATCCGCTT
TTGCAGATTG ATGGCGAGAT CACCGTCAGC CAGTGCTTCG AGATTTGGCC GAAGGAAAGA
GCGCAGAAAT TCATCCAGGA CACACAAGAC CACTTCATGG CGTCCTCGAA GCCCTGGATG
AGCCTCATGA TCGAGCAGAT GACCAAGACC GAATCGGACA AGGTCGATGC GGGGAAACTT
GCGCTTGCCG AGGACGCGGC CTCAGCGTTG GAAGATTTGA CGGCGCGCGA ACGGCAGTTC
GGTCACTACA ACATGACCAT CCTCTCCTAC GGCGATACAG AGAAGGAAAT GGAGGATACG
CTGTCTGAGG TCGGCAGCGC AATGCGGACC CTTGTAGGCG CGAAAGTAGT GCGAGAGCGC
ATGTACGCGT TGTCAGCTTT TACGGCGACC TTACCCGGTC AATGGGCAAA CATCGTCCGT
TGGGGCTTTG TGAATGTTGG CAACCTGGCC GACCTCGCAC AGCTTCGCGC AATTCGTACA
GGTGATCGAC GTAACAAGCA CCTCTCGGCC CAGCTGCAGC GGCCGATTCC CGCCCTCGCG
TTGCTCCCGA CCGAGCATAA CGTGCCGTTC AACTACAACT TCCACCAAGG TGATTTGCCT
CACTTCTTCG TCGTCGGCCC TTCTCGCTCC GGCAAGACGA CGCTGCTGAA TTTCCTGATC
TCGCAGTTCT TCAAATACCA CCCTTGCAAT GTCCTGATCT TCGACAAGGA CTATTCGTGC
TACGTGACTT CGGGCCTGCA GGGCGCCAAG CACATCGACA TGAACCCCAG CACTGGGAAA
CCGCCGCGTA TGAATCCGCT GCGGGTGGTC AAGGACATGA CGAAACGGGG TTGGCTGATG
CGGTGGCTCC AGCTCATCGT CAGCTTGCGT TCGTATGAGT GGAAGACGGA GGACGAACTC
ACTTTCAACA AGGCGCTGAA CATGCTTGCG GAGCAGCCTC CCGAGCACTG GAGGCTCTCC
GAGCTCGCCG ACTTTGTGCG GCCCCTGTCG AGCGAACTCT ATAAGGAGAT GCTGCCCTGG
CTGGAGGACG GCGGCACGTA TCCGCATTTT GACAGCGTCG AGGATGATTT CAGGCTTTCC
GACTTCACGG ACGTCGAGAT GGGCGGCCTG CTAGAGGACG AGATTCTGGC GCCAGTGTTC
ATCGACTACG CGTTCTTCTG CATCGACGAG ATGCTGACTT TGGATCCGAC CGCGGCAATC
AAACCGACGT TGATCTACCT CGAGGAGGTT TGGTATCTCC TGAAAAACAA AAAGCTTCGC
GAGCGGTTCG ACAACTGGCT TCGAACCTTG GCTAAAAAGA ACGCAATTGT CGGTATGACA
ACGCAATCCT TGGCCGAAAT CGCGGACAGC GACATCTTTA CGACCATTAT CGACAACATC
CAGAACCGGA TCTTCTTGCC GAATCCGAGC GTGATGGCGC ACTTGGATTT GTATCGCGAC
AAGTTCCAGC TCAATGACGA ACAGATCGAA CGAATTCGGA CTGCCAAACG GAAGGTGCAG
TACTACTTCG TTAATCCGGA GGGCATGTCG CGCATGGTCA ACGTAAAGTT TCCTCCGGAG
ATGCTCGCGT GTCTGCGGTC GGATCAACTG GCCAGAATGA AGTACGAGGA GTTCCGCGCC
AAGTTGGTCC CGGACTGGCA AGAGCAGTAC ATCGAAGAAT TGGTGCGAAT TGGGGAGGCG
GCGGAAAGTG AATAA
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| Protein sequence | MLSIKAILGS YLKSVRSFSE MVPWMGLNAS DMVFNVDGSL MVVYEVAGID AEGRLPIETD
GYVENFERAL KVFDEHILVW SIMDRRRTEQ YPDADFPTPI GKYLDLTWKQ HLFGQRQYEN
RHYFAVIYRN LGGTSGFFDK LSNHMDRYKV GILPALWKIG TAATSARKNA SFAFEQFDSH
ENHFRQILEE FETTVSSLGF KKLHNSELLT FMHRRVSPPN DHHRVAMPDT PVYLNTYLPD
STLRRKKKHL EFEGDVVRYV GAMSVKNWPN VIGPGVTDPL LQIDGEITVS QCFEIWPKER
AQKFIQDTQD HFMASSKPWM SLMIEQMTKT ESDKVDAGKL ALAEDAASAL EDLTARERQF
GHYNMTILSY GDTEKEMEDT LSEVGSAMRT LVGAKVVRER MYALSAFTAT LPGQWANIVR
WGFVNVGNLA DLAQLRAIRT GDRRNKHLSA QLQRPIPALA LLPTEHNVPF NYNFHQGDLP
HFFVVGPSRS GKTTLLNFLI SQFFKYHPCN VLIFDKDYSC YVTSGLQGAK HIDMNPSTGK
PPRMNPLRVV KDMTKRGWLM RWLQLIVSLR SYEWKTEDEL TFNKALNMLA EQPPEHWRLS
ELADFVRPLS SELYKEMLPW LEDGGTYPHF DSVEDDFRLS DFTDVEMGGL LEDEILAPVF
IDYAFFCIDE MLTLDPTAAI KPTLIYLEEV WYLLKNKKLR ERFDNWLRTL AKKNAIVGMT
TQSLAEIADS DIFTTIIDNI QNRIFLPNPS VMAHLDLYRD KFQLNDEQIE RIRTAKRKVQ
YYFVNPEGMS RMVNVKFPPE MLACLRSDQL ARMKYEEFRA KLVPDWQEQY IEELVRIGEA
AESE
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