| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_4720 |
|---|
| Symbol | |
|---|
| ID | 8017297 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012855 |
|---|
| Strand | + |
|---|
| Start bp | 61465 |
|---|
| End bp | 63477 |
|---|
| Gene Length | 2013 bp |
|---|
| Protein Length | 670 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 644828411 |
|---|
| Product | Integrase catalytic region |
|---|
| Protein accession | YP_002979611 |
|---|
| Protein GI | 241589586 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.086869 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAGA TTGTCCAACA TCAGCAGGAG TACACGCCCG AGTTCGTTGC TCGGGTTGGC
GTGCGCTTCT GCTACCGCGG CAGTGAATTT GAAATCGCGC ACGTCGCGTA CGGAGACGTG
CGCTACAACG CGGTCGCGGG TGGCACGAGC CGAAGGATCC CCTTGGTTCG CCTTCAGGAG
GAGATCCGCA GCGGCGCGAT CGTTGTCACC AGCGAGTCCA AAGCAATTCA GGAGTCGCCG
TACCTGAACC TCTCCTCCCC GGAGCTGCAG CGCCGTTTTC GGCAACTGCG GTACGCGCAG
GGGGCGGTTG CTGAACTGGC CAAGCCCACC GGGCGCGCCT TCCTTTCCGA GTGGATTGCA
TCGTACGCCG CGCGCATCGG AGACCCGAAT GTACCGGGAG CGAGTTCCGT TGCGCGGTGG
GTCAAGGTTC TGCGCGATTT CGGGGAAGAG TACTTCCTGG CGCGACCACC GCCGAAGGGG
AACTACACGC TTCGATTCGA TGTGGGGGTC GAAGCTGGCA TTCAGGAGGG AATCGCGGAC
TTTATGCGAG CGGAAAGACG TTCTTCGAAG AACGTCCTGG CCTATGTACA TGGATACTTA
CTGGAGCACT GTATGTCTGG AATCAAAGCC CCATCCGAAC GAACCCTCCG GCGCCGGATC
AACAAGGTGG ATCCGTTCCT TCTCAAGCGC GTCAAGGACG GGTCAATTGC TGCCGAGCGT
GCTGTACGGG CCGGCGGTCG GTCACATCTT GCCCATATGC CGATGTATAT CGTGCAGATC
GATTCTCATG TGCTTGATGT GCTGGTGGTC GACGAGTCGA CGCGCGATGT GATCGGGCGA
CCGACGCTTG CCCTTGCGAT CGATGTGCGA ACACGTTGCG TCGTAGGCTG GCATCTCAGT
ATGCATCCAC CATCCACGGT GACAACGCTT GCTGTCGTCA AAGACATGTT CACGCGGCCG
TCACGCGGCT TGCCTGGGGG CATCTGTGTG CATCTCGTTC CTGACAATGG CACCGAGTTC
AAGAACTCTG CCGTCATGCG CCTGCTGCTC AAGGCCAACG TCATCATTGA ACCGGCTGCG
ATTCGGGAGC CCAATCACAA GCCCCACATC GAGTCATTCT TTCGTACCTT CACAAGAAGC
CTCATTCAGA CGCTGCCTGG CACGACTTTC TCGAACCCGG CAGAGCGTGG CTCCTATGAT
TCGGCTGGCC GGGCCTGCCA TACGCTCGAA CAGGTCCGTT CCTATGTGCA TGAATGGATC
GAGGAGGTTT ACCACAAGCA ACAACACTCG AGCACTGGTA GGGCGCCCAT CATGATGTGG
AAGGAGGAGA CCGCTCCCGG AAAATGCACG CCGCTCACCA TGTCGGAAGA AGAGGTCAAC
GTCATTGCAC GCACGGTGAT CCGCGTTACG CCTAACGGAG GGCGGATTCG TCATGACGGC
CTGATCTGGT ACAGCCATGC GTTGCGTTCC CTTGAGCACC AATACAAGGG GCAGGTTGTG
GTTCTTATCG ACGAACTGGA TCTGGACAAG GTGTACGTCG AACACCCTTT GGAGAAGGGC
GCCGTCATCA CGGCGACGTC GACGAACCCC GAATACACGA AGGGCCTCAC CAAGTGGGCT
CATCGCGAGG CCAAGCGGAT CCTGGGCGAT ATGACGGAGC GGGACCGCAG GGAGTTGGGG
GAAAACGCTC CCATCTACGC GCTATATCAG CTGATGATGC GGATCCAGAA GGACTCAGCG
TTCGCGACGA AGCAGATAAA ACGTCTGAAG GAGGGCAAGA AGGAGCTTGA GCAACGATCC
AAGGATGTCG CAAAGGTCGT AGCCTCCTCC TCGGTTGTCT TGACGTCTCG AATTGACGAG
GTTGCGGGCA AACCGGAGCC TTCTGAACAG ACTGAACGGA TTGATCCTGA TACCGGTGAG
GTTCTGCCGG CCAAGCCGGG TCCGTCAAAG GCTGCCGTCA ACGGACTCAA TCACTTCGGC
AACCTTTCGC TGGACGCAAT CATTCTCGAC TAA
|
|---|
| Protein sequence | MSEIVQHQQE YTPEFVARVG VRFCYRGSEF EIAHVAYGDV RYNAVAGGTS RRIPLVRLQE
EIRSGAIVVT SESKAIQESP YLNLSSPELQ RRFRQLRYAQ GAVAELAKPT GRAFLSEWIA
SYAARIGDPN VPGASSVARW VKVLRDFGEE YFLARPPPKG NYTLRFDVGV EAGIQEGIAD
FMRAERRSSK NVLAYVHGYL LEHCMSGIKA PSERTLRRRI NKVDPFLLKR VKDGSIAAER
AVRAGGRSHL AHMPMYIVQI DSHVLDVLVV DESTRDVIGR PTLALAIDVR TRCVVGWHLS
MHPPSTVTTL AVVKDMFTRP SRGLPGGICV HLVPDNGTEF KNSAVMRLLL KANVIIEPAA
IREPNHKPHI ESFFRTFTRS LIQTLPGTTF SNPAERGSYD SAGRACHTLE QVRSYVHEWI
EEVYHKQQHS STGRAPIMMW KEETAPGKCT PLTMSEEEVN VIARTVIRVT PNGGRIRHDG
LIWYSHALRS LEHQYKGQVV VLIDELDLDK VYVEHPLEKG AVITATSTNP EYTKGLTKWA
HREAKRILGD MTERDRRELG ENAPIYALYQ LMMRIQKDSA FATKQIKRLK EGKKELEQRS
KDVAKVVASS SVVLTSRIDE VAGKPEPSEQ TERIDPDTGE VLPAKPGPSK AAVNGLNHFG
NLSLDAIILD
|
|---|
| |