| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_4691 |
|---|
| Symbol | |
|---|
| ID | 8017269 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012855 |
|---|
| Strand | - |
|---|
| Start bp | 22649 |
|---|
| End bp | 24157 |
|---|
| Gene Length | 1509 bp |
|---|
| Protein Length | 502 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644828383 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_002979583 |
|---|
| Protein GI | 241589558 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGAAG ACCGGTTCCG CCACCCGCGC ATTGGCGAAT CGAAACGCAG ACCGCGTGGC
ACGCCTGGCC GGAGCGCTGC AAAGCCTGGC ATGCGGGACG GCGATCGCGT CGCCATGCTG
GCCCGGAACT CCGACCGCTA CCTCGAGTAC CAGATGGCTG TGCCCTGGGG CGGTGGCGTG
CTGAACCCCT GCAACACCCG CTGGTCGGCG TCCGAAATCC TGTATTCGCT CAATGATTCG
GGCTCGATCC ACCTGCTGGT GGACGAAACC TTCCGCCCGC TCGCCGAGGA GATCCGCCGC
TATGCTACCA CGCTGCGCGA GGTGGTCTGT TGTGACGACG GCGATGTGCC GACCGGCATG
CATGGCTACG AGGCGCTGCT GGCCCAGGCC GAGCCGGCGA CCGATGCCGT GCGGAGGGGC
GACGATCTGG CCGGCATCTT CTATACCGGC GGGACCACGG GTTTCCCCAA GGGGGTGATG
CTCAGCCACA CCAATCTTTG CAGTTCCGGG CTGGCAGCAC ATGCAGAAGG GCTGGCTCCG
GCCGGCAGCA CCTATCTGCA TGCGGCGCCG ATGTTCCACC TGGCAGACAT TGGTGTTGCG
ATGGCGCATT GGATCGAGGG CAATACGCAT TGCGTGGTTC CGGCGTTCTC GCCAGAGGGG
GTGCTCGATG TGCTGGCGCG CGATCGCGTC ACCCATTTGC TGTTGGTGCC GACCATGATC
CAGATGCTGG TCGACCACCC GGCGATGCGG CAACCCCGCG ACCTGAGCGC GCTCTGGAGC
ATCGCCTACG GCGCTTCGCC GATCTCTGAG GCGGTACTTG AGCGGGCGAT GGCGGCGCTG
CCTGGCGTGG GCTTCGTGCA GGCCTACGGG ATGACCGAGC TGTCACCGCT GGCGACCATT
CTCCCAGATG TGTATCAGAC GCCGCAGGCA CGCACGCTCG GCAAGCTGCG CTCCGCAGGT
CGCGCCACCT TCTGCGCCGA AGTACGAATC GTCGATGTGG AGGGCCAGGA AGTGCCGCGT
GGCACCGTGG GCGAGGTGAT CGTACGCGGG CCCAACGTGA TGCAGGGCTA CTGGAACAAA
CCTGAGCAGA CCGCGGCCGC CGTACGCAAC CGCTGGATGC ACACAGGCGA CGGCGGCTAT
ATGGACGAGG CGGGCTTCGT CTTCGTTGTC GATCGCATGA AAGACATGAT CGTGACGGGG
GGCGAGAACG TCTATTCCGC CGAGGTCGAG AACGCCATCA CCCAACACCC CGCCGTGGCG
GCCTGCGCCG TCATCGGTAT ACCGAGCGCC CAGTGGGGGG AATCGGTGCA TGCCGTGGTG
GTGCGCAAGC CGGGCGCATC CGTTTCCACC GAGGAACTCA TTGCCCACTG CAAGACACTG
ATCGCAGGCT ACAAGTGCCC GCGCAGCCTG GATTTCTGTG ATGCGCTGCC ATTGTCCGGC
GCCGGCAAGA TCCTCAAGAC CGAGCTGCGC AAGCTCTTCT GGGAAGGGCA ACAGCGACAA
GTCCGCTGA
|
|---|
| Protein sequence | MQEDRFRHPR IGESKRRPRG TPGRSAAKPG MRDGDRVAML ARNSDRYLEY QMAVPWGGGV
LNPCNTRWSA SEILYSLNDS GSIHLLVDET FRPLAEEIRR YATTLREVVC CDDGDVPTGM
HGYEALLAQA EPATDAVRRG DDLAGIFYTG GTTGFPKGVM LSHTNLCSSG LAAHAEGLAP
AGSTYLHAAP MFHLADIGVA MAHWIEGNTH CVVPAFSPEG VLDVLARDRV THLLLVPTMI
QMLVDHPAMR QPRDLSALWS IAYGASPISE AVLERAMAAL PGVGFVQAYG MTELSPLATI
LPDVYQTPQA RTLGKLRSAG RATFCAEVRI VDVEGQEVPR GTVGEVIVRG PNVMQGYWNK
PEQTAAAVRN RWMHTGDGGY MDEAGFVFVV DRMKDMIVTG GENVYSAEVE NAITQHPAVA
ACAVIGIPSA QWGESVHAVV VRKPGASVST EELIAHCKTL IAGYKCPRSL DFCDALPLSG
AGKILKTELR KLFWEGQQRQ VR
|
|---|
| |