| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rleg_5549 |
|---|
| Symbol | |
|---|
| ID | 8016440 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhizobium leguminosarum bv. trifolii WSM1325 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012853 |
|---|
| Strand | - |
|---|
| Start bp | 136330 |
|---|
| End bp | 137868 |
|---|
| Gene Length | 1539 bp |
|---|
| Protein Length | 512 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644827716 |
|---|
| Product | type II and III secretion system protein |
|---|
| Protein accession | YP_002978916 |
|---|
| Protein GI | 241518288 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.00090409 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGATCAGCG CGATAGTATG CAACGCGATG GATGCGGCAT TGAACATTAG GGTTCATCCG
CTCCGCAAGA CGGATTTAGG GAAGTCCTCG GTCCATGCCG GCTGGATTGC GCATACAGTT
CTCCTGCTCA CGCTGCTGTC GTCGGCCACA TATTGCCGTG CCGAGAATGT CATCAGCGTT
ACAGAGACCG GTGTGAATGT CACGCGGCAT GTCAGCATCG GTCTAAATAA GACGCTCATC
GTTGAACTTC CTCAGGACGC TCATGACATT GTTGTTTCAG ATCCAGGCGT GTCTGACGCG
ATAGTGCGAG CGACACGCAC CATCTTTCTC TTTGGCAAAA AGGTCGGGCA AACGAATATC
TTCATCCTCG ATGCAAACAA GCGACCAATC GTCAATATCG ATATCGCGGT TGAGAGAGAC
ATTGCCGGGC TGGAGACGGA TTTGCGTCGT TTGATACCGG ATGCGGCCAT CAAGGTTGAG
ATTATTTCCG ATAATATTGT CCTCACCGGC ACCGTAAGGT CGGCACAGGA CTCGGCACAG
GCCGCCGATC TTGCATCCGC TTTCGTCAAA GGCGGGGAGG CGACGACCCG CACCCAAAGT
GCGTCGAGCG GGGGTAGTCA AGGATCCGTG GCCCTTGTTG CGGAAGATCG GCAGGAATCC
AAAATCATCA ACCTTCTTCG CATCGCAGCC GACGATCAGG TGATGCTCAA AATGACGATA
GCGGAGGTAA AGCGAGAGAT CCTGAAGCAA CTGGGCTTTG ACAATGAGCT AAAAAACGCT
GGTGGCTCAA CAATTGCCCA GCTGGGAACG GCATCGACGG ATGCGACGAC CGCGACCTCC
GGCGGCGGCC TATCAGCCCT ATTCAGCGGA TCCTTCGGCA AGCATGGCCT CTCAACGACA
TTGAATGCGC TTGAACAAGC GAAAGTGGTT CGAACCTTGG CCGAGCCGAC ATTGACGGCC
GTCTCGGGTC AATCGGCATC GTTTCAAGCA GGTGGCGAGG TCCTCTATTC AAACACCGAC
CGCGATGGCA ATACGACCCA AACCCCGTAC AGCTACGGCA TCAGCCTCTC ATTCAAGCCC
ATCGTCCTAA CGTCCGGTCG GATCAGCCTG CAGATCTCAA CCGAGGTGTC CGAACCGGTT
ACCTCTATAT CCGGTTCATC CCCGACCTAC GGCAAGCGTT CGACCAGCAC CACCGTTGAA
CTGCCATCGG GTGGTTCGAT CGCTCTGGCG GGGCTAATCC GAGATAACTT CAACAGGACC
TCCAATGGGA CGCCGGTCTT GAACAAGATT CCAGGGTTTG GCGCTTTGTT TCGCCAGACA
AGCTTCGAGA GAAACGAGAC TGAACTCGTA ATTATCGCCA CACCCTATTT GGTTCGCCCT
GTCGCGGCAA AAGATCTGAA TCGGCCTGAT GACAATCTTA GCCCAGCTGA TGATGCCTCT
CAGGGGTTAC TCGACCGGAT CAACAAGCTC TACGGCAACG GCAAAACCTT GGAGCCAACA
GCGCAATATC ACGGCACCGT CGGCTTCATA TACAAGTGA
|
|---|
| Protein sequence | MISAIVCNAM DAALNIRVHP LRKTDLGKSS VHAGWIAHTV LLLTLLSSAT YCRAENVISV
TETGVNVTRH VSIGLNKTLI VELPQDAHDI VVSDPGVSDA IVRATRTIFL FGKKVGQTNI
FILDANKRPI VNIDIAVERD IAGLETDLRR LIPDAAIKVE IISDNIVLTG TVRSAQDSAQ
AADLASAFVK GGEATTRTQS ASSGGSQGSV ALVAEDRQES KIINLLRIAA DDQVMLKMTI
AEVKREILKQ LGFDNELKNA GGSTIAQLGT ASTDATTATS GGGLSALFSG SFGKHGLSTT
LNALEQAKVV RTLAEPTLTA VSGQSASFQA GGEVLYSNTD RDGNTTQTPY SYGISLSFKP
IVLTSGRISL QISTEVSEPV TSISGSSPTY GKRSTSTTVE LPSGGSIALA GLIRDNFNRT
SNGTPVLNKI PGFGALFRQT SFERNETELV IIATPYLVRP VAAKDLNRPD DNLSPADDAS
QGLLDRINKL YGNGKTLEPT AQYHGTVGFI YK
|
|---|
| |