| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rleg_5541 |
|---|
| Symbol | |
|---|
| ID | 8016432 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhizobium leguminosarum bv. trifolii WSM1325 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012853 |
|---|
| Strand | - |
|---|
| Start bp | 128135 |
|---|
| End bp | 128998 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 644827708 |
|---|
| Product | intradiol ring-cleavage dioxygenase |
|---|
| Protein accession | YP_002978908 |
|---|
| Protein GI | 241518280 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.000749052 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0000194786 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACGCCGG GTCCGATGGC GCTGAATTTC AGCGAGGCCA CCTCGCATGA CATCTTTGCG
CAACGACTTC AGCCATCAAA GGACAACATC CTGCCGCAGG TTCTCGCCGC GGCGGTGACG
CATCTTCATA CCCTGATCCG CGAAGTGCGG CCCACCCAGG CGGAATGGCG CCAAGTCATC
GAATTCTTGA CCGACGTTGG CCATGCAAGC GACGAGCGGC GCCAGGAGTG GGTGCTCCTG
TCGGATCTGC TCGGCGCTTC GACACTGGTC GAGGAGATCA ATTCGCGCCG TCCGAAGACG
GCCACCCCCA ACACCGTGCG CGGACCGTTC TTCCGCGCCG ACGTTCCGCA ATTGCCGCTC
GGCGGCAATA TTTCGCTTGA TGGTATCGGC GAGCCGCTGG AAGTTTCCGG CCGCGTGCAG
GATCTCGATG GCGATCCCAT CGCAAATGCC GAGATCATCA CCTGGCAGGC CAATGCTCAA
GGCCTCTACG AAAACCAGCA GCCGGACCTG CAGCCGGAAT TCAACCTGCG CGGCGGCTTC
CGCACGGATC CCGACGGACG CTTCCACTAT CGGACCATCA AGCCATGCGG CTATGGCGTG
CCTGACGATG GTCCCGTCGG AAAGCTTTTG CGGCGGGCGG GCTATCCGCT GCGCCGCCCC
GCGCATCTTC ATTTCATCAT CAAGGGGCCG GACTTCGAGA CGATCACCAC GCATATCTAT
GACGGCAGCG ATCCGCATCT GGCCGAAGAC GCGATCTTCG CCGTCAAGCC CGAGTTGGTG
CGAACCTTCG AGCAGCAGGG CAAGGGGTGG TTGTTGAAAC TGACGTTCGT CATGGTCCGC
GCCAGGCAGG GAGCCGATAC ATGA
|
|---|
| Protein sequence | MTPGPMALNF SEATSHDIFA QRLQPSKDNI LPQVLAAAVT HLHTLIREVR PTQAEWRQVI
EFLTDVGHAS DERRQEWVLL SDLLGASTLV EEINSRRPKT ATPNTVRGPF FRADVPQLPL
GGNISLDGIG EPLEVSGRVQ DLDGDPIANA EIITWQANAQ GLYENQQPDL QPEFNLRGGF
RTDPDGRFHY RTIKPCGYGV PDDGPVGKLL RRAGYPLRRP AHLHFIIKGP DFETITTHIY
DGSDPHLAED AIFAVKPELV RTFEQQGKGW LLKLTFVMVR ARQGADT
|
|---|
| |