| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rleg_5485 |
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| Symbol | |
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| ID | 8016794 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhizobium leguminosarum bv. trifolii WSM1325 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012853 |
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| Strand | + |
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| Start bp | 70069 |
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| End bp | 72516 |
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| Gene Length | 2448 bp |
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| Protein Length | 815 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 644827653 |
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| Product | conjugal transfer protein TrbE |
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| Protein accession | YP_002978853 |
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| Protein GI | 241518225 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00798845 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTATCCC TTCGCGCTTT CCGGCACACG GCGCCGTCCT TCGCCGATCT CGTCCCCTAC
GCAGGGCTTG TCGATAACGG GATCATCCTG CTCAAGGATG GCTCACTGAT GGCTGGCTGG
TATTTTGCCG GGCCTGATTC CGAAAGCTCC ACCGATTTCG AACGGAACGA GGTGTCGCGC
CAGATCAACG CCATATTGTC ACGTCTCGGG TCCGGTTGGA TGATCCAGGT AGAGGCGGTG
CGGCTCGCAA CGGTCGACTA CGCCTCGGCT GGGAAATCGC ATTTCCCCGA TCGGGTGACG
CAGGCGATCG ACGAGGAACG ACGAGCCCAC TTCGAGCGCG AGCAGGGGCA TTTCGAAAGC
CGTCATGCCA TCATCGCCAC CTATCGGCCG ACCGAGCAGC GTCGATCGAG GCTCAGCAAG
TACATCTATT CCGACGAAGA CAGTCGAAAG CAATCCTATG CCGACACCGT GCTCTTCATC
TTCCGCAATG CGATCCGGGA AGTCGAACAG TATCTCGCCA ATATCATTTC CATCAGGCGA
ATGCTGACCC GGGAGACCGC CGAGCGCGGC GGCGCGTGCG TTGCTCGCTA TGACGAACTG
CTACAATTCG TCCGCTTTTG CGTGACGGGC GAGAACCACC CTGTCCGACT TCCCGATATC
CCAATGTATA TCGACTGGAT CGTGACCGCC GAGCTTCAGC ACGGTCTTGC TCCCAAGGTG
GAGGACCGTT TTCTCGGCGT GGTGGCAATC GACGGCCTTC CATCCGAAAG CTGGCCGGGC
ATCCTGAACA GCCTGGATGC GATGCCGCTT GGCTATCGAT GGTCGTCGCG CTTCATTTTC
CTCGACGCCG AGGAGGCGAG GGTACGCCTT GAGCGGACCC GCAAGAAGTG GCTGCAGAAG
GTTCGACCTT TCTTCGACCA ACTTTTCCAG ACGCAAAGCC GTTCGGTCGA CCAGGACGCA
ATATCGATGG TCGCCGAGAC CGAGGATGCA ATCGCACAAG CATCGTCACA GCTCGTCGCT
TATGGATATT ACACGCCGGT CGTCGTGCTG TTCGACAACG ATGCGGAACG ACTTAACGAA
AAGACGGAAG CGATCCGGCG TCTCATCCAG GCCGAGGGCT TTGGCGCACG AATCGAGACG
CTGAATGCGA CCGACGCCTA TTTGGGGAGC CTGCCTGGAA ACTGGTATTG CAACATTCGC
GAGCCGCTGA TCAACACGCG CAATCTCTCC GATCTCATCC CGCTCAACTC CGTCTGGTCC
GGAAATCCGC AGGCACCTTG CCCGTTTTAC CCACCCGATT CACCACCGCT GATGCAGGTC
GCGACCGGCT CGACGCCCTT TCGGCTCAAC CTTCATGTCG ATGACGTCGG CCATACCCTG
GTGTTCGGTC CCACCGGCTC AGGAAAGTCG ACGCTCCTTG CGCTGATCGC TGCACAGTTC
CGCCGCTACG AGAACGCCCA GATCTTCGCC TTCGACAAAG GCCGTTCGAT GCTGCCGCTG
ACACTTGCTT GCGGCGGCGA TCACTACGAG ATCGGCGGCG ACGAAGACAC CGGGCTCTCC
TTTTGCCCGC TGTCCGAACT GTCGTCGGAC GGCGATCGTG CCTGGGCGTC CGAGTGGATC
GAAAGCTTGG TGGCGATGCA GGGCATCTCG ATCACGCCCG ATCACCGCAA CGCCATCTCC
CGCCAGATCG GCCTGATGGA CGGGGCTCCG GGTCGGTCGA TCTCGGATTT CGTCAGTGGC
GTTCAGATGC GCGAGATCAA GGATGCTCTC CATCACTACA CCGTCGACGG CCCGATGGGC
CAGTTGCTCG ATGCCGAGAC CGACGGCCTC GCACTGGGGC TATTTCAGAC GTTTGAAATC
GAGCAGGTCA TGAACATGGG CGAGCGCAAT CTCGTGCCGG TGCTCACCTA TCTCTTCCGC
CGCATCGAAA AACGCCTAAC CGGCGCGCCA AGCCTCATCG TCCTCGACGA GGCCTGGCTG
ATGCTCGGTC ATCCCGTGTT CCGCGACAAA ATCCGGGAAT GGCTCAAGGT GATGCGCAAA
GCCAATTGCG CGGTGTTGCT TGCCACCCAG TCGATCTCGG ATGCCGAACG CTCTGGCATC
ATCGACGTCC TGAAAGAGAG CTGCCCAACG AAAATCTGCC TGCCGAATGG GGCAGCCCGC
GAGACCGGGA CCCGCGATTT CTATGAGCGG ATCGGCTTTA ACCGACGGCA GATCGAGATC
GTCGCGACCG CCATACCGAA ACGGGAATAT TACGTCGCGT CACCCGAAGG GCGCCGCCTG
TTCGACATGG CTCTTGGCCC GCTGACGCTG TCGTTCGTGG GCGCCTCGAG TAAGGACGAC
TTGAAGCACA TCCGTGCGCT TCATGAAGAA CATGGCCCTG AATGGCCGCT GCACTGGCTC
CACAAAAGAG GGATCAAGGA TGCTGCATCG CTTCTCAAAG ACGCATAG
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| Protein sequence | MVSLRAFRHT APSFADLVPY AGLVDNGIIL LKDGSLMAGW YFAGPDSESS TDFERNEVSR
QINAILSRLG SGWMIQVEAV RLATVDYASA GKSHFPDRVT QAIDEERRAH FEREQGHFES
RHAIIATYRP TEQRRSRLSK YIYSDEDSRK QSYADTVLFI FRNAIREVEQ YLANIISIRR
MLTRETAERG GACVARYDEL LQFVRFCVTG ENHPVRLPDI PMYIDWIVTA ELQHGLAPKV
EDRFLGVVAI DGLPSESWPG ILNSLDAMPL GYRWSSRFIF LDAEEARVRL ERTRKKWLQK
VRPFFDQLFQ TQSRSVDQDA ISMVAETEDA IAQASSQLVA YGYYTPVVVL FDNDAERLNE
KTEAIRRLIQ AEGFGARIET LNATDAYLGS LPGNWYCNIR EPLINTRNLS DLIPLNSVWS
GNPQAPCPFY PPDSPPLMQV ATGSTPFRLN LHVDDVGHTL VFGPTGSGKS TLLALIAAQF
RRYENAQIFA FDKGRSMLPL TLACGGDHYE IGGDEDTGLS FCPLSELSSD GDRAWASEWI
ESLVAMQGIS ITPDHRNAIS RQIGLMDGAP GRSISDFVSG VQMREIKDAL HHYTVDGPMG
QLLDAETDGL ALGLFQTFEI EQVMNMGERN LVPVLTYLFR RIEKRLTGAP SLIVLDEAWL
MLGHPVFRDK IREWLKVMRK ANCAVLLATQ SISDAERSGI IDVLKESCPT KICLPNGAAR
ETGTRDFYER IGFNRRQIEI VATAIPKREY YVASPEGRRL FDMALGPLTL SFVGASSKDD
LKHIRALHEE HGPEWPLHWL HKRGIKDAAS LLKDA
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